Shewanella vesiculosa: KDH10_003438
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Entry
KDH10_003438 CDS
T08322
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
svm
Shewanella vesiculosa
Pathway
svm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDH10_003438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svm03019
]
KDH10_003438
03009 Ribosome biogenesis [BR:
svm03009
]
KDH10_003438
Enzymes [BR:
svm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KDH10_003438
Messenger RNA biogenesis [BR:
svm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KDH10_003438
Ribosome biogenesis [BR:
svm03009
]
Prokaryotic type
rRNA helicases
KDH10_003438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UJL42281
LinkDB
All DBs
Position
complement(4017032..4018921)
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AA seq
629 aa
AA seq
DB search
MSSERTFRELGLSESLLRSLDELGYENPTPIQAASIDPLMAGKDIIGQAQTGTGKTGAFA
LPLLNKIDMKINAPQILVLAPTRELAVQVAEAFGSYAKFMKGFHVLPIYGGQSMQQQLNA
LKRGPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWVLEHKPADS
QLALFSATMPEQIKRVAAKHLSNPVNISIASSQTTVESIDQRYVQVSQHNKLEALVRVLE
VENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGKLDILIA
TDVAARGLDVERIGHVVNYDIPYDSEAYVHRIGRTGRAGRTGMAILFVTNREMRMLRTIE
RATNSRISPMKVPSPESVAERRLSRLGEQIQETINGDLDFMKNAVAELCQQLEVDTDLLA
AALLQQVQQERPLQLPTITERQRDSRDERGSSDRGDRNSDRGDRPRRERSDRGERSSRPA
PNSFGDAEGLKDNPDVKMNRYVIDVGRENGVGVGNIVGAIANEANIDSRFIGQIQLFDQV
TTVDLPDGMPKDILSHLRKVRVCGRPLNIREAGDEVFADTTRGAGAPRRPRSDRARSDRP
RTDRPAGDRPASDRPASAERRPRKPRDNG
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctgaaagaactttccgcgaactcggcctgtctgagtctttgttgcgttcgctt
gacgagttaggttatgaaaacccaactccaattcaagctgcgagtatcgacccgcttatg
gctggtaaagatattatcggtcaagcacaaactggtactggtaaaacaggcgcatttgcc
ctgcctttactaaacaaaatcgacatgaaaatcaatgctccacagattttggtgttagct
ccaacccgcgaattagcggttcaagttgccgaagcatttggtagttatgccaaattcatg
aaaggcttccacgtactaccgatttacggtggtcaaagcatgcaacaacaattaaacgcc
cttaagcgtggaccacaagtgattgttggtactccaggtcgtgtaatggatcacatgcgt
cgtggcacattaaaactagatagcttaaaagcgttagtattagacgaagccgatgaaatg
ctaaaaatgggcttcatcgacgatatcgaatgggtattagagcacaagcctgctgatagc
caacttgcattattctcagcgactatgcctgagcaaattaagcgcgttgcagctaagcac
ttatctaacccagtgaatatcagcatagcgtctagccagacaacagttgagtctattgac
caacgttatgtgcaagtatcacaacacaataaactagaagcgttagtacgtgttttagaa
gttgaaaatactgaaggtattatcatcttcgttcgtacccgtaacagctgtgttgaatta
gcagaaaaattagaagcccgtggttatgcttcatcgccattacatggtgacatgaatcag
caagctcgtgagcgtgctgtagagcagcttaagcgcggcaagttagatattttaatcgcg
actgacgttgcggctcgtggtctagacgttgaacgtattggtcacgtagtaaactacgat
attccttatgattcagaagcctatgtacaccgtatcggtcgtactggtcgtgctggtcgt
actggtatggcaattctatttgtaaccaatcgtgaaatgcgcatgttacgcactatcgaa
cgtgctacaaacagccgtatttcgccaatgaaagtacctagccctgaatcagttgcagag
cgtcgtttatctcgtttaggcgagcaaatccaagaaaccatcaacggtgacttagatttc
atgaaaaatgctgtcgcagaattatgtcaacaacttgaagttgataccgatttactggct
gctgctttgttacaacaagtacagcaagaacgtccactacagttaccgactattaccgag
cgtcaacgtgattcacgtgacgaacgtggtagtagcgaccgtggtgaccgcaatagcgac
cgtggcgatcgtccacgtcgtgaacgcagtgaccgtggcgagcgtagcagccgtccagca
ccaaacagctttggtgatgcagaaggcttaaaagataacccagacgtgaaaatgaatcgt
tatgttatcgatgtaggtcgtgaaaatggtgttggtgtaggtaacatcgttggtgcaatt
gctaacgaagcaaacatcgacagccgtttcattggtcaaatccaattgtttgatcaagtc
acaacagttgatttaccagacggaatgcctaaagacatcctttcacacctaagaaaagtg
cgtgtttgtggtcgtcctttaaacattcgtgaagcgggtgatgaagtgttcgctgacacg
actcgcggcgcaggcgctccacgtcgtccacgtagtgatcgtgctcgtagtgaccgtcca
cgtactgaccgcccagcgggtgatcgtccggctagtgaccgccctgcaagtgcagaacgt
cgtccacgtaagccacgtgacaacggttaa
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