Shewanella vesiculosa: KDH10_003668
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Entry
KDH10_003668 CDS
T08322
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
svm
Shewanella vesiculosa
Pathway
svm02020
Two-component system
svm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
svm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
KDH10_003668
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KDH10_003668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svm03021
]
KDH10_003668
Transcription machinery [BR:
svm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KDH10_003668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
DUF5039
Motif
Other DBs
NCBI-ProteinID:
UJL42477
LinkDB
All DBs
Position
complement(4279904..4281388)
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AA seq
494 aa
AA seq
DB search
MKASLQLKMGQHLTMTPQLQQAIRLLQLSSLELQQEIQQALDSNPLLEIEDEFSQAKDSV
KESRDQSDTDFSDNSVVNIEKDTSTVDTAESMTKETMDDLAMDTTWDEVYTASPMSGSGS
ASMRDDDMPFQGETTEGLYEHLEWQKNLTPFSDTDRAIATAIIDAIDERGYLTQSTEDIL
EAMGDESVELDEVEAVLKRIQHFDPVGVAARDLSECLFIQLAQYADTTPHIDNARLLIKD
YLDLIAGRDFRLLMRKTKLKENELRDAITLIQSLNPRPGLLVTAIDDEYVIPDVTVLKKN
GRWVVELNPDNMPKIGVNQQYAAMARSSKNSADSQFIRGHLQEAKWFIKSIESRNETLLK
VANCIVQFQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGLFELKYF
FSSHVSTDDGGECSSTAIRAFIKKLVAAENQQKPLSDSKMAQLLADQGINVARRTIAKYR
EAMLIPPSNQRKSL
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgtcactccaactcaaaatgggtcaacacttaaccatgacccctcaattgcag
caagcgatccgcttactgcaattatcgtcattggagctacagcaagaaatccaacaagca
ttggactcaaacccattgcttgaaatagaagatgagttttctcaagcaaaagactcagta
aaagaaagtcgcgaccaatcggacaccgactttagtgacaacagcgtggtcaatatagaa
aaagacacctcaacagtcgacacagcagaatccatgaccaaagaaaccatggacgattta
gctatggataccacatgggatgaagtgtacaccgcctcaccaatgtcaggttcaggcagc
gctagcatgcgcgatgatgatatgccattccaaggtgaaacgactgaaggcttatatgag
catttagagtggcaaaaaaatctcacaccattttctgacacagatcgagcgattgctacc
gcgattattgatgccattgatgaacgcggttatttaacccaaagcactgaagatattctc
gaagctatgggtgatgaaagtgtcgaactagatgaagttgaagcggtattaaaacgtatt
caacactttgatcccgttggtgttgccgcgcgagatttaagcgaatgtttattcatccaa
ttagcccaatatgccgacacaaccccacatatagacaatgcccgtctgctcattaaagac
tatttagatttaattgctgggcgcgattttagattattgatgcgcaaaaccaagctcaaa
gaaaacgagttgcgtgacgcaatcaccttaatccagtcacttaaccctcgcccgggcttg
ttagtcaccgctattgatgacgaatatgttattcctgatgtaaccgtactaaagaagaat
ggccgttgggttgtagagttaaacccagacaatatgcctaaaattggcgttaatcaacaa
tatgcagccatggctagaagcagtaaaaactctgccgatagccaatttattcgcggtcat
ttacaagaagctaaatggttcatcaagagtatcgaaagccgcaatgagaccttattgaaa
gtcgccaattgtattgtgcaatttcagcaaggtttctttgaatatggtgaagaagccatg
aaacctatggtgctcaatgatattgctgaagcagtagaaatgcatgaatcaactatttca
cgagttaccactcaaaaatatatgcacacaccacgtgggctatttgaattaaagtacttt
ttctctagccatgtcagcaccgacgatggcggagaatgctcatctaccgctattcgtgct
tttatcaaaaaactggttgcagcagaaaaccagcaaaagccattaagtgacagcaaaatg
gcccaactgctggcagatcaggggatcaacgttgcgcgtcgtacgattgcaaaataccgc
gaagcgatgctcattccgccctcaaaccaacgtaagagtttataa
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