Shewanella vesiculosa: KDH10_003690
Help
Entry
KDH10_003690 CDS
T08322
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
svm
Shewanella vesiculosa
Pathway
svm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDH10_003690 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svm03019
]
KDH10_003690 (rnr)
03016 Transfer RNA biogenesis [BR:
svm03016
]
KDH10_003690 (rnr)
Enzymes [BR:
svm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KDH10_003690 (rnr)
Messenger RNA biogenesis [BR:
svm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KDH10_003690 (rnr)
Transfer RNA biogenesis [BR:
svm03016
]
Prokaryotic type
tRNA degradation factors
KDH10_003690 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
TFIIE_beta
HTH_11
HTH_20
Motif
Other DBs
NCBI-ProteinID:
UJL42497
LinkDB
All DBs
Position
4298898..4301381
Genome browser
AA seq
827 aa
AA seq
DB search
MINDPHFEREQDKYDNPIPSREYILEYLRAQKSPVTRDKIAEALSITDEVPLEALRRRLR
AMERDGQLVFTRGQSYGLPERMDLLSGTVLGHRDGFGFFKPDEGGDDLFISNRDMLMYFH
GDKVLAQKAGTDRRGRREARIVRLVHERTAALVGRYHVDAGMGFVIADDRRITQEILIAS
EDTLGARAGDVVVVELTRRPGRFVKAAAKVTEVLGKTMAPGMEIEIALRNYDLPHTWSAI
IEKKLKRIPEEVTEEDKLGRVDLRHLPLVTIDGEDARDFDDAVYAEAKPSGGWRLWVAIA
DVSHYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLKPKVDRLCMVAEMTIS
AAGKLSGTKFYPAVMHSHARFTYTQVADMLEGGPIAPEHEALFPHLLCLQSLYLTLDERR
AERGAIAFETLETQFIFNEQRKIDKIVPRGRNQAHKIIEECMILANVASAKFVKKHKGEV
LYRVHEAPSEQKLANFKEFLAERGLSMDGGLEPTPTDYQNLMLKIADRPDFELIQVMLLR
SMRQAVYSPDNEGHFGLALEAYSHFTSPIRRYPDLILHRVIKYLLAKEQGDVTDKWTQDG
GYLYQLEELDLLGEECSTTERRADEATRDVSDWLKCEYMQDHVGDTFDAVIASVTSFGLF
VRLNELFIDGLVHISSLASDYYQFDPMRQRLVGENTRQVYQVGDAVTVKVAAVNLDDRQI
DLLMVGDNSKGAGKSARKGSKPSTARERVNVEGAKAARKGKSTDKPKSDKSKSDKPKASK
RRSSNKASSPASKPVAAKKSTAAEQKADTTKPNSSVKKTPAKRSKRK
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgatcaacgatcctcattttgagagagaacaagacaagtacgacaatcctattcctagc
cgtgagtatattttagaatacttgcgtgcccaaaagtctcctgttacccgcgataaaata
gctgaagcattatccattaccgatgaagtgccattagaagcacttcgtcgtcgtttacgt
gcgatggaacgtgatggccagctagtctttactcgcgggcaaagctatggcttacctgag
cgtatggatttattgtctggtaccgttttaggccaccgcgatggatttggcttctttaag
cctgatgaaggcggtgacgacttatttatcagtaatcgcgatatgctgatgtattttcat
ggcgataaagtgctagcacaaaaagcgggtactgatcgtcgtggtcgtcgtgaagctcga
attgtgcgcttagttcatgagcgaacggctgccttagttggccgttaccacgtcgacgcc
ggtatgggctttgtgattgcagatgacagacgtatcacccaagaaatattaatcgccagt
gaagataccctaggcgcccgcgccggtgatgtggtggtggttgagttaacccgtcgccct
ggtcgttttgttaaagcggcagcgaaagtgaccgaagtcttaggtaagaccatggcaccg
ggtatggaaattgaaattgccttacgtaattatgatttaccccacacttggtcagcgatt
attgagaaaaaactcaaacgtattcctgaagaagtcaccgaagaagataaattaggtcgc
gtcgatttacgccatttacccttggtcactattgatggcgaagatgcccgtgattttgat
gatgcggtatatgctgaagcaaaaccaagtggcggctggcgtttatgggtggcgattgct
gatgtgagtcattatgtacgtactgattcagcattagatactgaagcgcgtgcacgtggt
aattcggtgtatttcccgtcgcaagttattcctatgctgcctgagaaaatatctaatggc
ttgtgttcattaaagccaaaagtcgaccgtttatgtatggttgctgagatgacaatttct
gcagcgggtaagttatcgggcaccaagttttatccagcagtaatgcattctcatgctcgg
tttacctatacccaagttgctgacatgctagaaggtggcccaatagcccctgagcatgaa
gcgctattcccacatttattatgtttgcagtcgttatatctcactttagatgagcgtcgt
gctgaacgtggtgctattgcatttgaaaccttagaaacgcagttcatctttaatgagcag
cgtaaaattgacaaaatcgtcccacgaggccgcaaccaagcgcataaaatcattgaagaa
tgtatgattttagccaacgtggcttcggcaaagtttgtcaaaaaacacaaaggtgaggtg
ctgtatcgtgtgcatgaagcgccgtcagaacaaaaactggctaactttaaagagtttctt
gctgagcgcggcttaagcatggatggtggcttagaaccaaccccgactgactatcaaaat
ctgatgttaaaaattgctgaccgtcctgactttgagttaattcaggtgatgttattgcgc
tcaatgcgccaagctgtttacagcccagataacgaaggtcattttggtttagcattagaa
gcgtattcgcatttcacttcgccaattcgtcgttaccctgatttgattttacatcgagtg
attaagtatttactcgcaaaagagcagggcgatgtcaccgacaagtggactcaagatggc
ggttatctttatcagcttgaagagttagatctattaggtgaagaatgttcaaccaccgag
cgccgcgcagatgaagccactcgcgatgtcagtgattggttaaaatgtgaatacatgcaa
gatcacgtcggtgatacctttgatgccgtcattgcttcagtcactagctttggtctgttt
gttagattaaacgaattatttattgatggcttagtacacatatcaagccttgccagcgac
tactaccaattcgatccaatgcgtcaacgactggttggtgaaaacactcgccaagtgtat
caagtgggtgatgctgttactgttaaggttgctgcggttaatcttgatgatcgtcaaatt
gacttgttgatggtgggtgacaatagtaaaggcgcaggcaaatcggcacgtaaaggcagc
aagccttcaacggctcgtgaacgagtgaatgttgaaggggctaaagccgcacgtaaaggt
aagtcgacagataaacctaagtcagacaaatctaagtcggataagcctaaggccagtaaa
cgtcgctcaagcaataaagcgtcatcgcctgcgagcaagccagtggcggcaaagaagtcc
accgcggcagagcaaaaagctgataccacaaaaccgaattctagcgttaagaaaacccct
gccaagcgcagcaagagaaagtaa
DBGET
integrated database retrieval system
