Shewanella vesiculosa: KDH10_003791
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Entry
KDH10_003791 CDS
T08322
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
svm
Shewanella vesiculosa
Pathway
svm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDH10_003791 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svm03019
]
KDH10_003791 (pcnB)
Enzymes [BR:
svm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
KDH10_003791 (pcnB)
Messenger RNA biogenesis [BR:
svm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KDH10_003791 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
ORC_WH_C
Motif
Other DBs
NCBI-ProteinID:
UJL44710
LinkDB
All DBs
Position
complement(4407015..4408316)
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AA seq
433 aa
AA seq
DB search
MSRDGHSISRRQISENALKVLYRLNKSGYKAYLVGGGVRDILLGIEPKDFDVATNATPDD
IKKLFRNCRLVGRRFRLAHIVFGRDVIEVATFRGHHSESNDKVSKSNAEGRLLRDNVYGE
IDEDAERRDFTINALYYDISDYSIRSYGGGINDLNARKIKLIGDPDTRYREDPVRMLRAV
RFATKLDMQIDAVTADPIKALAPLLGDIPAARMYEEVLKLFFAGKAEANYHMMQDFGLFA
PLFPQVSALIEESPKGHTAKMLQTVMRNTDLRVSEDKTVTPAFFFAAILWYPVKQRADDI
AIESGLTHYDAYVAAMGDVLEKQCLTISLPRRFSTPARDIWQLQLRLERGQGTRAFKLLE
HPKFRAAYDLLLLRGEVEAGNTAKIADWWQAFVEADETDRSDIAKSIKGSNTRNRNAPQR
KRRRKPAAKPTEE
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atctccagagatggtcactcaatttcacgtcgccaaattagtgaaaatgcacttaaagta
ctctatcgtctgaataaatcgggctacaaagcctatttagtcggcggtggtgttcgcgat
attctgcttggcatagaaccaaaagactttgatgtagcgacgaatgctaccccagatgat
attaaaaagttatttcgcaactgtcgtttagttggccgtcgatttagactggcacatatc
gtttttggtcgtgatgttattgaggttgccacgttccgcggtcaccacagtgaaagcaat
gacaaagtatcgaaatcaaacgctgaaggtcgtttattacgtgataacgtttatggtgag
atagatgaagatgctgaacgtcgtgacttcactatcaatgcactctactacgacattagc
gactactctattcgcagttatggcggtggaataaacgatcttaatgcacgcaagataaaa
cttatcggcgatccagatacccgttaccgtgaagatccggtgcgcatgcttcgagccgtt
cgttttgcgactaaacttgatatgcaaatcgacgccgttaccgccgatcctatcaaagca
ctcgcaccactattaggtgatattcccgcggcgcgcatgtatgaagaagtattgaaatta
ttctttgccggtaaagccgaagcgaattaccacatgatgcaagattttggtttatttgct
ccgctgttcccacaagtgagtgccctaattgaagagtcgcctaaaggtcatacagctaaa
atgctgcaaaccgttatgcgtaatactgacctacgagtcagtgaagataaaaccgttacg
ccagcatttttctttgccgcaatattatggtacccagttaaacaacgcgcagatgatatc
gcgattgaaagtggcctaacgcattacgatgcctatgttgcagctatgggtgatgtgctt
gagaaacagtgtttaaccattagcttaccacgtcgttttagtactccagcacgtgacatt
tggcaattacaactgcgcttagaacgtggtcaaggcacccgcgcctttaaactgctagag
cacccgaaatttagagcagcttatgatttgctgctactgcgcggtgaagttgaagcgggt
aataccgccaagatagcggattggtggcaagcgtttgttgaagccgatgaaactgaccgc
agtgatatcgccaaaagcatcaaaggcagtaatactcgcaatcgaaatgcaccacagcgc
aagcgtcgtcgaaaacccgctgccaagcctacagaagagtaa
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