Shewanella vesiculosa: KDH10_003880
Help
Entry
KDH10_003880 CDS
T08322
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
svm
Shewanella vesiculosa
Pathway
svm03410
Base excision repair
svm03430
Mismatch repair
svm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
svm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KDH10_003880 (recJ)
03430 Mismatch repair
KDH10_003880 (recJ)
03440 Homologous recombination
KDH10_003880 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svm03400
]
KDH10_003880 (recJ)
DNA repair and recombination proteins [BR:
svm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KDH10_003880 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KDH10_003880 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KDH10_003880 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
UJL42649
LinkDB
All DBs
Position
4507629..4509353
Genome browser
AA seq
574 aa
AA seq
DB search
MSHRIVRRPQVDDSHLPVSLSPLLKQLYARRGVTEDNCDLLLSKLLRPETMKGLAEAAIV
IADAIAAQRSILIVGDFDADGATSTSVCMLALKMMGAQHIDYLIPNRFDYGYGLSPEIVA
VAYSKNADVLITVDNGISSIEGVAAAKLLGMTVVVTDHHLPGNTLPNADVIVNPNQPGCQ
FASKSIAGVGVAFYLMSALRAELRQRNWYQLQHIVEPNLGSLLDIVALGTVADVVSLDTN
NRILVNAGLQRVRSGRCRVGITTLLEVAKRSPEKMVAADFGFAVGPRLNAAGRLDEMALG
VEILLCEDIMLARRMAAELDGLNQERRELETGMQQEALKSLSKVSLNEDHLPWGIAIFQD
DWHQGVIGILASRIKDRYHRPVIAFADAGDGTIKGSARSIKGLHMRDVLERINSLYPGMI
TKFGGHAMAAGLSLKADVFELFTQAFDDAVREVLDYEQLTGELLSDGELPSDLMTLDMAF
LLRNAGPWGQSFEEPLFDGMFNVVQQRIVGEKHLKLLLETQCGSTMLDAIAFNVDLAIWP
DATIKHARVVYKLDVNEFRGNQTVQLMVDYIEPL
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
ttgtctcatagaatagtccgacgtcctcaggttgatgatagccatttacccgtctcttta
tcaccattattgaaacaactttatgctcgccgtggcgtgactgaagacaactgtgattta
ttactcagtaagttattacgccccgagacgatgaaagggctagcggaagctgccattgtc
attgccgatgccattgctgctcagcggtcgatactcatagttggggattttgacgctgat
ggtgctacctcaaccagtgtatgtatgttggcactgaaaatgatgggggctcagcatatt
gattatctcattccaaaccgttttgattatggctatggtttaagtcctgaaattgttgcc
gtggcatactctaaaaatgctgatgtattaattactgttgataatggtatctcttcgatt
gaaggcgtggctgcagccaagttattggggatgaccgttgtcgtgacagatcatcacttg
cccggtaataccttgcctaacgctgatgttattgtaaatccaaaccagccagggtgtcag
tttgccagtaagtctattgctggtgttggggtggcattttatcttatgtcagcactgcgc
gccgaattaaggcaacgtaattggtatcaactacaacacattgtagagcctaatctcggc
tcattattggatattgtcgctctagggacggttgctgatgtggtgtcgctagacactaat
aatcgtattttagttaatgcaggtttacagcgtgttagaagtggtcgttgtcgtgtcggt
attactactttacttgaagtggcaaaacgtagccctgaaaagatggttgccgccgatttt
ggattcgcggtgggccccagattaaatgctgctggtcgtttggatgaaatggctttaggg
gttgagatcttactgtgtgaagacatcatgcttgcaagaagaatggctgccgaattagat
ggcttgaaccaagagcgccgtgaacttgaaacgggtatgcagcaagaggcattaaagagt
ctatcgaaagtatcactaaatgaggatcatttaccttgggggattgctatctttcaggat
gattggcatcaaggggtgattggtattttggcctcacggattaaggatcgctatcatcgg
ccggttattgcttttgctgatgccggtgatgggacgattaaaggctcggctcgttcaatt
aaaggcttgcacatgcgcgatgtgctcgagcgtatcaatagcctctatccagggatgata
actaaatttggcggccatgcgatggcggcaggactctcgttaaaagctgatgtgtttgaa
ctctttacccaagcctttgatgatgccgtgagggaggtattagattatgagcaactcaca
ggagagcttctgtctgatggtgagttaccgagtgatttaatgacgctcgatatggccttt
ttattacgtaatgctgggccttgggggcagtcatttgaagagccgctatttgatggcatg
tttaatgttgtccagcagcgtatcgtcggcgagaaacatttaaagctattattagagacg
cagtgtggcagcactatgttagatgcaattgcctttaatgtggacttagccatatggcca
gatgcaacgattaaacatgctcgcgtggtttataagcttgatgtgaatgagtttagaggt
aaccaaaccgtgcagttaatggtggattacattgaacccttgtga
DBGET
integrated database retrieval system
