Shewanella vesiculosa: KDH10_003911
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Entry
KDH10_003911 CDS
T08322
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
svm
Shewanella vesiculosa
Pathway
svm03030
DNA replication
svm03430
Mismatch repair
svm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
svm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KDH10_003911 (holA)
03430 Mismatch repair
KDH10_003911 (holA)
03440 Homologous recombination
KDH10_003911 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
svm03032
]
KDH10_003911 (holA)
03400 DNA repair and recombination proteins [BR:
svm03400
]
KDH10_003911 (holA)
Enzymes [BR:
svm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KDH10_003911 (holA)
DNA replication proteins [BR:
svm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KDH10_003911 (holA)
DNA repair and recombination proteins [BR:
svm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KDH10_003911 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
DUF4388
DUF6063
TraI_2_C
Motif
Other DBs
NCBI-ProteinID:
UJL42671
LinkDB
All DBs
Position
complement(4541347..4542381)
Genome browser
AA seq
344 aa
AA seq
DB search
MRVYPDQLKQHLTPLPQCFLLFGDDPWLIENSKQHILSAAKKQGFEERVQLSQETGFNWG
DLVQEWQAMSLFASRRIIELTLPQGKPGIEGAAAFQTLLQHPNPDMLLIVQGPKASAEQT
NSKWFKSLDAKGIYLPCATPEGKQFERWLDSRITHYQLTVHHDAKAMLFTLFEGNLLAGE
QAMQLLQLLSPKQNITPEQLSEYFEDQSRFSVFQLCDAILGNHQKHAQHMLAQLQAEGTA
MPILMWALFKEINLLLTLKLALHNGEQLSKLWGQHRIWDKRKPLYQAAITRLDLDHIEHM
LAFASQLELNLKQKGHEDWIGLSHLCILFDPRAHKRLAHIELTD
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtttatccggatcaactcaagcaacacctcacgcccctaccacaatgcttttta
ctgtttggcgatgacccatggttaatcgaaaacagtaaacagcacattctgagtgcggct
aaaaaacagggctttgaagaacgcgttcaactcagtcaagaaaccggctttaattggggc
gatctagtccaagaatggcaagcaatgagtttatttgctagccgacggattattgaatta
accctaccacagggcaaacccggtattgaaggcgctgcggcatttcagacgctgttacaa
catcctaatccagatatgctcctgattgttcaaggccctaaagccagtgctgaacaaacc
aatagtaaatggtttaaatcactcgatgccaaaggcatctatttaccttgcgccacccct
gaaggtaaacagtttgaacgctggttagacagccgtattactcattatcagctgactgtc
caccatgatgctaaagcgatgttgtttactttatttgaaggtaatttactggctggtgag
caagcaatgcaattgttacaactgctcagccctaagcaaaatattactccagagcaactg
agtgaatattttgaagatcaatctcgttttagtgtgtttcaactctgtgatgccatatta
ggcaatcaccaaaaacatgcgcaacacatgttggcacagttgcaggcagaaggcacagct
atgcctattttaatgtgggctttatttaaagagattaacctactactcacgttaaagctg
gcgctgcataatggtgagcaactgagtaagttatggggccaacaccgcatttgggataaa
cgtaaaccactttatcaagctgcaataacgcgattagatttggatcacattgagcacatg
ctcgcgtttgcctctcaattagaactaaatctcaaacaaaaaggccatgaagattggatc
ggtctaagtcatttatgcattttattcgacccacgggcacataagcgtttagcccatatt
gaactcactgactga
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