Shewanella vesiculosa: KDH10_003968
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Entry
KDH10_003968 CDS
T08322
Symbol
ung
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
svm
Shewanella vesiculosa
Pathway
svm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
svm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KDH10_003968 (ung)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svm03400
]
KDH10_003968 (ung)
Enzymes [BR:
svm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
KDH10_003968 (ung)
DNA repair and recombination proteins [BR:
svm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
KDH10_003968 (ung)
Prokaryotic type
KDH10_003968 (ung)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
UJL42712
LinkDB
All DBs
Position
4594237..4594899
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AA seq
220 aa
AA seq
DB search
MTSHWQTLFEQQQSQPYYQDLMHFIASQRAANKVVYPPDDEVFAAFNLTPLSAVKVVILG
QDPYHGPNQAHGLSFSVKKGIKPPPSLANIYKELTNDIDGFVIPEHGDLSAWAKQGVLLL
NTVLTVEQGLAHSHAKAGWETFTDSVLKCLDQQASPIIFVCWGNHAIKKGRLITAPHHHV
MNGPHPSPLSAYRGFFGCHHFSSINQLLINQGNKPINWQV
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
atgacttcccattggcaaaccttgtttgaacaacaacaatcacagccatattatcaagat
ttgatgcactttattgcctcacaaagggccgctaataaggttgtttatccaccggatgat
gaagtgtttgctgcttttaatttaacgcccttgtcagcggttaaagtcgtgatactaggg
caagacccttatcatggcccaaatcaagctcacgggctgtctttttcggttaagaagggc
ataaaaccaccgccttcattggctaatatctataaagagttaaccaatgacattgacggc
tttgtgatcccagaacatggtgatttaagcgcttgggctaagcaaggggtgttgttactc
aatactgtgttgacagtagagcaggggttagctcattcacatgctaaagctggctgggag
acatttaccgatagtgtgctgaagtgcttagatcaacaagcatcaccaatcatatttgtg
tgttggggcaatcacgcgattaaaaaaggtcgattgattaccgcacctcatcatcatgta
atgaacggcccacatccatcacccttatctgcttaccggggcttttttggttgtcatcat
ttttcaagtatcaatcaattattaattaaccagggtaataaaccgataaattggcaagtg
tga
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