Shewanella vesiculosa: KDH10_003990
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Entry
KDH10_003990 CDS
T08322
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
svm
Shewanella vesiculosa
Pathway
svm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDH10_003990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svm03019
]
KDH10_003990
Enzymes [BR:
svm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KDH10_003990
Messenger RNA biogenesis [BR:
svm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KDH10_003990
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
UvrD-helicase
P-loop_SecA
AAA_19
Gag_p24
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UJL42732
LinkDB
All DBs
Position
complement(4615933..4617234)
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AA seq
433 aa
AA seq
DB search
MKFESFSFAPEILRAIAECGYQSMTPIQQQAIPAIRRGEDVLASAQTGTGKTAAFALPIL
QRMCDNPKETMPSNTRALILTPTRELAAQVADNITAYSKHLNLTVLTIYGGVKIDTQSQK
LKRGADVIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSADIKKILQAVNKNR
QNMLFSATFSTEVKKLANEMLEKPKVITVDKQNTTAATVSQVIYPVEQRRKRELLSELIG
TKNWRQVLVFTATRDAADKLVKELNLDGIPSGVVHGEKAQGSRRRALREFVEGKIRVLVA
TEVAARGLDIQNLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADIE
KLIGQQIRRVTVPGYEVGSREMLLKQIEKRRSFAKKQQRGDNAGAQMIAEKNMDGRRVKV
GKVSSTVKYKKIK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgaatcttttagcttcgccccagaaatattacgcgcgatcgctgagtgcggt
tatcaatctatgacgccaattcaacaacaagcgatcccggcaatccgccgtggtgaagac
gtgttggccagcgcacaaacaggaacaggtaaaactgcggctttcgcactgcctattctg
caaagaatgtgtgataacccaaaagaaacgatgccgtctaacactcgcgccttaattctt
acaccaactcgtgagcttgccgcacaggttgcagataacattaccgcttacagtaaacac
ctcaacttaactgtattaaccatttatggtggcgttaagatagatactcagtcacaaaaa
ctgaaacgcggcgccgacgtgattgtagcaacgccaggtcgtttacttgaacacatagtg
gcgtgtaacttaagtttatctaatgttgaatttttagtacttgatgaagccgaccgtatg
cttgatatgggctttagtgccgatattaaaaagatcctccaagcagtaaataaaaatcgc
caaaacatgttgttctctgccaccttctctaccgaagtgaaaaagctagcgaatgaaatg
cttgaaaaaccaaaagtgattactgtggataaacaaaacaccacagcagctaccgtaagc
caagttatttaccctgttgaacaacgtcgcaagcgtgaattattatctgaacttatcggt
actaaaaactggcgccaagtgttggtatttaccgcgacccgtgatgcggcagacaagtta
gttaaagagttaaatctagatggtattccatctggcgtggttcatggcgaaaaagctcaa
gggagtcgtcgtcgcgcgctacgtgaatttgtggaaggcaaaattcgtgtattagtggcc
accgaagttgctgcccgtggtcttgatattcaaaaccttgaatacgttgttaattacgat
ttaccgtttttagccgaagattatgtccaccgtattggccgtactggccgtgcaggtaaa
actggcgtggcaatttcgtttgtaagccgtgaagaagaacgcacattagctgacattgaa
aaattaattggccaacaaattcgccgtgttacggtaccaggttatgaagtgggtagccgt
gaaatgctgcttaagcaaattgaaaaacgtcgtagttttgccaaaaagcaacaacgcggt
gataacgctggcgcacagatgattgccgagaaaaacatggatggccgtcgtgttaaagtc
ggtaaagtgagcagtaccgtgaagtacaaaaaaattaagtaa
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