Shewanella vesiculosa: KDH10_004007
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Entry
KDH10_004007 CDS
T08322
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
svm
Shewanella vesiculosa
Brite
KEGG Orthology (KO) [BR:
svm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svm03400
]
KDH10_004007 (phrB)
Enzymes [BR:
svm01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
KDH10_004007 (phrB)
DNA repair and recombination proteins [BR:
svm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
KDH10_004007 (phrB)
Prokaryotic type
KDH10_004007 (phrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
UJL42744
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All DBs
Position
4634812..4636245
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AA seq
477 aa
AA seq
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MTSMNSLMWFRQDLRVADNPALVAACQFAKQHQSKVRAVYIVTPSQWAQHDVAPIQINFI
QRHVNLLAQSLAALGIPLDVLHLEWFSDTHAALNDYLQQHNIDAVFAGSEPEINERRRDS
GLIEQGLPLTLIDQDCVLASGQVQNLSGDMYKVFTPFSKKWKSIASQKAIVPLAVPAPVA
AALPSPAAIEFTCPSRNSEQWAAGEGAAKRILEQFLASQVADYQAERDFPALEGTSRLSP
FLAIGVVSSRQCVAAILAQYPEALVDDTCAAKTWLNELIWREFYRHLLVAFPHLSMAQNF
NELGKGIVWRNNAQEFTAWCDGQTGYPIIDAAMRQLNQTGWMHNRLRMVVASFLTKHLLV
DWRWGERYFRQQLIDGDLAANNGGWQWSAGTGCDAQPYFRVFNPMTQSSKFDPDGSFIKR
YVPEVARWSLKDIHEPKTVNVNDLFASPQGDSYPKPIVEHKMARLRAIEVLSALKRG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgacttctatgaatagcttgatgtggttcaggcaagacttacgtgttgccgataaccca
gcattagttgcggcttgtcaatttgccaagcaacatcaaagtaaggttagggctgtgtat
attgtgactccgtcgcaatgggcgcagcatgatgtcgcgccaatacaaattaactttatt
cagcggcacgtcaatttattagcccagtcacttgccgcgttaggcatacccttggacgta
ctgcatcttgagtggtttagtgatactcatgccgcgttaaatgattacctgcagcagcat
aatattgatgccgtgtttgccggtagcgagccggaaattaacgaacgccgccgcgacagt
ggcttaattgagcaagggttacccctgacgttaattgatcaagactgtgtattggcaagt
gggcaagtacaaaatttgtctggtgatatgtataaggtgtttaccccattttcgaaaaaa
tggaaaagcattgccagtcaaaaagcgatagttcccctcgcagtgccagctccagttgcg
gcagccttgccatcacctgccgctattgagtttacttgcccttcgcgtaacagcgaacaa
tgggctgctggcgaaggtgcagcaaagcgaatacttgaacaatttttagcaagtcaggtt
gcagattatcaagcagaacgagatttccccgcccttgaaggcacgagtcgcttatcaccc
tttttagctatcggagtggtgagttctcgtcaatgtgttgcggcaatattagcgcaatac
ccagaagcattagtcgatgatacttgcgcggcgaaaacctggttaaatgagcttatttgg
cgtgaattttatcgacatctgctcgtggcattcccgcatttatcaatggcgcaaaatttt
aatgagctgggtaaagggattgtttggcgaaataatgctcaggagtttaccgcctggtgc
gatgggcagacgggttatccgattattgatgctgccatgcgccaattaaatcaaacgggt
tggatgcataaccgcttacgtatggtggtcgccagttttttaaccaagcacttattggtc
gattggcgctggggtgaacgttactttagacagcaattgattgatggagacttagcggcc
aataatggtggttggcaatggtctgctggcaccggatgcgatgcgcagccttattttagg
gtatttaaccctatgacccaaagtagtaagtttgaccctgatggcagttttattaaacgt
tacgttccagaggttgcccgctggtcgttaaaagatattcatgaacctaaaacggttaac
gttaatgacttatttgcctcaccacaaggcgacagttatccaaaacctattgttgaacac
aagatggcccgcctccgggcaatagaagtgttaagtgcgctaaagcgtggttaa
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