Streptomyces vinaceus: CP980_10720
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Entry
CP980_10720 CDS
T06865
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
svn
Streptomyces vinaceus
Pathway
svn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CP980_10720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svn03021
]
CP980_10720
03019 Messenger RNA biogenesis [BR:
svn03019
]
CP980_10720
Transcription machinery [BR:
svn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CP980_10720
Messenger RNA biogenesis [BR:
svn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CP980_10720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
AAA
NACHT
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
QEV45485
UniProt:
A0A5J6J4P6
LinkDB
All DBs
Position
complement(2461534..2463642)
Genome browser
AA seq
702 aa
AA seq
DB search
MSDTTDLMGAADTTVDTSAPAAGAAPKRRRSGTGLEGMVLAELQQVASGLGIRGTARMRK
SQLIEVIKEAQAGGGAPKAAAPAADAAEAKPKRRATSKARTGEAAAEAPAEKPAAQAQIE
IPGQPASDDAPAGERRRRRATAPSGSPETAAPAAVQVEAKTETATTTATAPAEVKAEAAT
AVSAPAQEGEGRGRRDRRDRGDRAEREGGRRDRRDRGAKADDQGQGAQGQGQAGQGQGGG
QGGQAQGGGRGDRQDRQQQGGRQDRQQQGRQDRQDRQGPQGNGPEDDFDDEGGRRGRRGR
YRDRRGRRGRDEFAPNEPQVADDDVLIPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQ
VRKAGLRKGDHTTGAVRQPKDGERREKFNALVRLDSVNGMAPESGRGRPEFQKLTPLYPQ
DRLRLETDPGVLTTRIIDLVSPIGKGQRGLIVAPPKTGKTMIMQAIANAITTNNPECHLM
VVLVDERPEEVTDMQRSVKGEVISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLD
SITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFFGAARNIEDGGSLTILATALVDTGS
RMDEVIFEEFKGTGNMELKLDRKLADKRIFPAVDVDPSGTRKEEILLNSEELAIVWKLRR
VLHALDSQQAIELLLDKMKQTKSNAEFLMQIAKTTPSGKNDD
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgctgccgacaccactgtcgacaccagtgccccc
gccgcgggcgccgcccccaagcgtcgccgctccggcaccggccttgagggcatggtcctg
gccgagctccagcaggtcgcgtcgggcctcggtatcaggggcaccgcgcggatgcgcaag
agccagctgatcgaggtcatcaaggaggcgcaggcgggtggcggcgcccccaaggccgcg
gctcccgccgcggacgccgccgaggccaagccgaagcgccgcgccaccagcaaggcccgt
acgggtgaggccgccgcagaggcgcccgccgagaagcctgccgcgcaggcgcagatcgag
atcccgggccagccggcctccgacgacgccccggccggcgagcgccgccgccgtcgggcc
acggccccctccggcagcccggagaccgcggcccccgccgccgtgcaggtagaggccaag
accgagaccgccaccaccaccgcgaccgctccggccgaggtcaaggcggaggcggccacc
gccgtctccgctcccgcccaggagggcgagggccgcggccggcgcgaccgccgcgaccgc
ggtgaccgtgccgagcgcgagggcggccgccgtgaccgccgcgaccgcggcgccaaggcc
gacgaccagggccagggcgcccagggtcagggccaggccggccagggtcagggcggcggc
cagggcggccaggcccagggcggtggccggggcgaccgccaggaccgccagcagcagggc
ggccgtcaggaccgccagcagcagggccgtcaggaccgccaggaccgccagggcccccag
ggcaacggtcccgaggacgacttcgacgacgagggcggccgtcgcggccgtcgcggacgc
taccgcgaccgccgcggccgtcgtggccgcgacgagttcgcgccgaacgagccgcaggtc
gccgacgacgacgtcctgatccccgtcgcgggcatcctggacatcctcgacaactacgcg
ttcatccggacctcgggctacctgcccggccccaacgacgtgtacgtctccctcgcccag
gtccgcaaggccggtctgcgcaagggcgaccacaccaccggtgccgtgcgccagcccaag
gacggcgagcgccgcgagaagttcaacgccctcgtgcgcctggactcggtgaacggcatg
gcgcccgaatccggccgcggccgcccggagttccagaagctgaccccgctgtacccccag
gaccggctccgtctggagaccgacccgggcgtgctgacgacccgcatcatcgacctcgtg
tcgccgatcggcaagggccagcgaggcctgatcgtggccccgccgaagaccggcaagacc
atgatcatgcaggcgatcgccaacgcgatcaccacgaacaaccccgagtgccacctgatg
gtcgtcctggtcgacgagcgtccggaagaggtcaccgacatgcagcggtcggtcaagggc
gaggtcatctcctcgaccttcgaccgcccggccgaggaccacaccaccgtcgccgaactg
gccatcgagcgcgccaagcgcctcgtcgagctgggtcacgacgtggtcgtcctgctggac
tccatcacccgtctgggccgcgcgtacaacctcgcggcgcccgcctccggccgcatcctg
tccggtggtgtcgactcgaccgcgctgtacccgccgaagcgcttcttcggtgccgcgcgc
aacatcgaggacggcggctcgctgaccatcctggccaccgcgctggtcgacaccggctcg
cgcatggacgaggtgatcttcgaggagttcaagggcaccggcaacatggagctcaagctc
gaccggaagctcgccgacaagcgcatcttcccggccgtcgacgtcgacccgtcgggcacc
cgcaaggaggagatcctcctcaacagcgaggagctcgccatcgtctggaagctgcgccgg
gtgctgcacgcgctcgactcgcagcaggccatcgagctgctcctcgacaagatgaagcag
acgaagtcgaacgccgagttcctgatgcagatcgccaagacgaccccgtcgggcaagaac
gacgactga
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