Shewanella violacea: SVI_0096
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Entry
SVI_0096 CDS
T01206
Symbol
kdtA
Name
(GenBank) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase
KO
K02527
3-deoxy-D-manno-octulosonic-acid transferase [EC:
2.4.99.12
2.4.99.13
2.4.99.14
2.4.99.15
]
Organism
svo
Shewanella violacea
Pathway
svo00540
Lipopolysaccharide biosynthesis
svo01100
Metabolic pathways
Module
svo_M00060
KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
SVI_0096 (kdtA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
svo01005
]
SVI_0096 (kdtA)
Enzymes [BR:
svo01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.99 Transferring other glycosyl groups
2.4.99.12 lipid IVA 3-deoxy-D-manno-octulosonic acid transferase
SVI_0096 (kdtA)
2.4.99.13 (Kdo)-lipid IVA 3-deoxy-D-manno-octulosonic acid transferase
SVI_0096 (kdtA)
2.4.99.14 (Kdo)2-lipid IVA (2-8) 3-deoxy-D-manno-octulosonic acid transferase
SVI_0096 (kdtA)
2.4.99.15 (Kdo)3-lipid IVA (2-4) 3-deoxy-D-manno-octulosonic acid transferase
SVI_0096 (kdtA)
Lipopolysaccharide biosynthesis proteins [BR:
svo01005
]
Lipid A
SVI_0096 (kdtA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glycos_transf_N
Glycos_transf_1
Epimerase_2
Motif
Other DBs
NCBI-ProteinID:
BAJ00067
UniProt:
D4ZDE5
LinkDB
All DBs
Position
111761..113029
Genome browser
AA seq
422 aa
AA seq
DB search
MNRFFYSVLLYLLLPLLVLYLAIRAIKSADYRGRWGERFGLTSLKQSDLLIHCVSMGETL
AAIPLIKAIQAAFPQLTITVTTTSPTGSAEVVKAFGSSVQHCYLPFDISICVRRFLKQVA
PKSCIIMETELWPNLVHQASKSGIKLMLANARLSEKSAEKYRKQAKLTLPMLQSLDLIAA
QSEQAAERFIDLGVKPENISVCGSLKFDLSISAEKIEQAKTLRLEWHKSDCPIWVAGSVH
PGEFEAILNAHRQLLADKPDALLIMVPRHPEQFNAAANKIDGAGFNLSRRSLNESLQPNT
QVLLGDTMGELLTFYGAADQAFVGGTLIDNGGHNPLEPAALGLPVFVGPQHWDFAEITGL
LEDAGALKVIASESELAGELISKFNDQAAYEAASEAGLKVVSANRGALKQQFELAKQLND
LK
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgttttttctactctgtcttgctctaccttttactgccgttattggtgttatat
ttagccatacgtgcaattaagagcgctgactatcgtggacgttggggggagaggtttggc
ctgacatcactcaagcaaagcgatctgctcattcattgtgtgtccatgggggagacgttg
gcggcaatccctttaattaaagcgattcaagcagcatttccccagctgacaattactgtg
actaccacaagtcctaccggttccgccgaggtggtaaaagcctttggttctagtgtgcag
cattgttacttacccttcgatatctcaatctgtgttagacgtttcctcaagcaggtcgcg
cctaaatcttgcattatcatggagacagagctctggcctaacttggttcatcaggcatcg
aaatctgggatcaaactaatgctggcgaatgctcgcttatccgaaaagtcggcggaaaaa
tatcgaaaacaagccaaactaaccttgcccatgttacagagcttagatctgatagcggcg
caatctgagcaagcggcggaacgttttatcgatcttggggtaaagcctgaaaatatcagt
gtctgtggcagtctcaagttcgatctcagcatatcggcagaaaaaatagagcaagccaag
acgttacgcctggagtggcataagagcgactgtcctatttgggtggccggtagtgtgcat
ccgggagagtttgaggccatcttgaatgcacatcgccagctattagcggataagcctgat
gccttgcttatcatggttccccgtcatcctgagcagtttaatgccgccgccaataagatt
gatggtgcgggatttaacttatctcgccgcagcttaaatgaatcgctgcagccaaatact
caagtattattaggcgataccatgggggagctactcaccttctatggcgccgcagatcaa
gcctttgtcggtggcaccctgatagacaacggtggccataatccactggagccagccgca
ttgggattaccggtattcgtcggcccccagcattgggattttgctgagataacaggtttg
ctagaagatgccggcgcattgaaggtgattgcttcggagagtgagcttgcaggtgaattg
ataagtaagttcaatgaccaagcggcctatgaagcggccagtgaggctggacttaaggtt
gtcagcgctaatagaggcgcgctgaagcaacagtttgagctcgcgaaacaattgaacgac
ttaaaataa
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