Shewanella violacea: SVI_0108
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Entry
SVI_0108 CDS
T01206
Symbol
rfaD
Name
(GenBank) ADP-L-glycero-D-manno-heptose-6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
svo
Shewanella violacea
Pathway
svo00541
Biosynthesis of various nucleotide sugars
svo01100
Metabolic pathways
svo01250
Biosynthesis of nucleotide sugars
Module
svo_M00064
ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
SVI_0108 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
svo01005
]
SVI_0108 (rfaD)
Enzymes [BR:
svo01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
SVI_0108 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
svo01005
]
Core region
SVI_0108 (rfaD)
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GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
Motif
Other DBs
NCBI-ProteinID:
BAJ00079
UniProt:
D4ZDF7
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All DBs
Position
complement(124223..125176)
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AA seq
317 aa
AA seq
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MIVVTGAAGFIGSNLVKALNDMGRCDIIAVDDLSDGTQMFNLADCEIADYLDKDDFLAKI
KAGDFNGQLEVIFHQGACSSTTEWDGKFMMANNYEYSKSMLHYCQMNKCQFIYASSASVY
GGSDKFVEQRQFEKPLNVYAYSKFLFDQYVRQQKLTTQVAGLRYFNVYGPREQHKAGMAS
VAFHFNNQIKATGVCRLFEGVEGYQDGQQLRDFVYVKDVVKVNLWLWQNPEISGVFNCGT
GEAQSFNDVANAVINYHDEGKIEYIPFPEKLKGAYQHYTQADLTRLRQAGYTQAFKTVEQ
AVPEYLDWLKSQHFIGQ
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgattgtagtcacaggtgccgcaggatttattggcagtaacttagtcaaagcactcaac
gatatgggccgctgtgacatcattgccgttgacgatctcagcgacggcacacaaatgttt
aatttagccgactgtgaaatcgccgactatcttgataaagatgattttcttgccaagatc
aaagcgggtgactttaatggtcaacttgaagtgattttccatcaaggcgcatgctcatcg
accactgagtgggatggcaagttcatgatggcgaacaattatgaatactcgaagagtatg
ctccattattgtcagatgaataaatgtcagtttatttatgcctcttcggcctctgtttat
ggtggcagcgataaattcgttgaacaacggcaattcgagaagccattgaatgtttatgcc
tactccaagtttctattcgatcaatatgttaggcagcagaaattaaccactcaagttgca
ggtttacgttacttcaatgtttacggcccccgagaacagcataaagcaggcatggccagc
gttgcattccatttcaataatcaaattaaagcgacaggagtctgtcgactcttcgaaggc
gttgaaggctatcaggatggtcaacagttacgtgactttgtttacgtaaaagatgtcgtt
aaggtgaatttgtggttatggcagaaccctgagatatccggcgtatttaactgtggtacc
ggtgaagcccagagctttaacgatgtggcgaatgccgtcataaactatcatgatgaaggt
aagattgagtacatcccctttccggaaaaattaaagggggcttaccaacattacacccaa
gccgacttaactaggcttcgtcaagcgggttacactcaggcatttaaaacggtagagcaa
gcagtacctgaatacttagactggcttaagtcgcaacactttatcggtcaataa
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