Shewanella violacea: SVI_0113
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Entry
SVI_0113 CDS
T01206
Symbol
mutM
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
svo
Shewanella violacea
Pathway
svo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SVI_0113 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svo03400
]
SVI_0113 (mutM)
Enzymes [BR:
svo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SVI_0113 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SVI_0113 (mutM)
DNA repair and recombination proteins [BR:
svo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SVI_0113 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
BAJ00084
UniProt:
D4ZDG2
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All DBs
Position
complement(130293..131108)
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AA seq
271 aa
AA seq
DB search
MPELPEVEVTRQGISPHLVGQQVIGLVVRNASLRWPVPQIAQQIVGQVIRNVRRRAKYLL
IDTDAGTTIVHLGMSGSLRIVPRSTQVEKHDHIDLELASGKILRFNDPRRFGAWLWCELP
EEAHPLLSKLGPEPLKDNFTPKYLFDSLRNKKKAIKLCLMDNHIVVGVGNIYANEALFAA
GIHPQTEAGRLDIERLTILVTQVKQILASAIKQGGTTLKDFTNADGKPGYFAQKLHVYGR
GGDTCTQCGNLLSEIKLGQRATVFCGICQTR
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactgcccgaagttgaagtaacccgccaaggaatcagcccacatctagtcggc
cagcaagtcatcggcttagtggtacgcaatgccagtctgcgctggccagtgcctcaaata
gcccagcagatagtcggccaggtgatacgcaatgtacggcgccgggcgaaatacttgctt
atcgacaccgatgccggcactaccatagtgcacttaggcatgtcaggcagtttacgcata
gtgccccgcagcactcaagtagagaagcatgaccatatagatctcgaacttgccagcggt
aagatattgaggtttaacgaccctcgccgtttcggggcctggctctggtgtgaactgccg
gaagaagctcatcctctgttatcaaaattaggacctgagccactcaaagataactttact
cccaagtatttatttgactccctaaggaacaagaagaaagccataaagctctgcctgatg
gataatcatatcgtggttggtgtgggtaatatttacgctaatgaggcgctatttgcagcg
gggatccatcctcagaccgaagcaggaagactggatatcgaacgcttgaccatcttagta
acccaagttaaacagatactagccagtgccatcaagcaaggtggtactaccttgaaagac
ttcactaatgccgatggtaaaccaggttatttcgctcagaaactgcatgtctatggccgc
ggtggcgacacttgtactcaatgtggcaatctactcagcgagataaagctgggacaaaga
gctacggtattttgtggcatatgccagacgagatag
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