KEGG   Shewanella violacea: SVI_0266
Entry
SVI_0266          CDS       T01206                                 
Symbol
lpdA
Name
(GenBank) pyruvate dehydrogenase complex, E3 component, lipoamide dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
svo  Shewanella violacea
Pathway
svo00010  Glycolysis / Gluconeogenesis
svo00020  Citrate cycle (TCA cycle)
svo00260  Glycine, serine and threonine metabolism
svo00280  Valine, leucine and isoleucine degradation
svo00310  Lysine degradation
svo00380  Tryptophan metabolism
svo00620  Pyruvate metabolism
svo00630  Glyoxylate and dicarboxylate metabolism
svo00640  Propanoate metabolism
svo00670  One carbon pool by folate
svo00785  Lipoic acid metabolism
svo01100  Metabolic pathways
svo01110  Biosynthesis of secondary metabolites
svo01120  Microbial metabolism in diverse environments
svo01200  Carbon metabolism
svo01210  2-Oxocarboxylic acid metabolism
svo01240  Biosynthesis of cofactors
Module
svo_M00009  Citrate cycle (TCA cycle, Krebs cycle)
svo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
svo_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA
svo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
svo_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:svo00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    SVI_0266 (lpdA)
   00020 Citrate cycle (TCA cycle)
    SVI_0266 (lpdA)
   00620 Pyruvate metabolism
    SVI_0266 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    SVI_0266 (lpdA)
   00640 Propanoate metabolism
    SVI_0266 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    SVI_0266 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    SVI_0266 (lpdA)
   00310 Lysine degradation
    SVI_0266 (lpdA)
   00380 Tryptophan metabolism
    SVI_0266 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    SVI_0266 (lpdA)
   00670 One carbon pool by folate
    SVI_0266 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:svo04147]
    SVI_0266 (lpdA)
Enzymes [BR:svo01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     SVI_0266 (lpdA)
Exosome [BR:svo04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   SVI_0266 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Pyr_redox_3 FAD_oxidored FAD_binding_2 GIDA HI0933_like AlaDh_PNT_C NAD_binding_8 Thi4 FAD_binding_3 DAO DUF3739
Other DBs
NCBI-ProteinID: BAJ00237
UniProt: D4ZEK7
LinkDB
Position
314672..316102
AA seq 476 aa
MSNEIKTQVVVLGSGPAGYSAAFRAADLGLETVIIERFSTLGGVCLNVGCIPSKALLHVS
KVIEEAKAVADHGVVFGEPKIDLDKLRGFKNSVISQLTSGLGGMSKMRKVDVVNGFGKFT
GPNTIEVVGEDGVKVVHFEQAIIAAGSRPIELPFIPHSDPRVWNSTDALELKEVPGKLLI
MGGGIIGLEMGTVYASLGSQIDVVEMLDQLIPAADKDIVRVYTKKVKNKFNLMMQTKVTA
VEAKDDGIYVTMEGKKAPAEAVRYDAVLVAIGRAPNGKSIDAEKAGINVDERGFINVDKQ
MRTNVANIYAIGDIVGQPMLAHKGVHEGHVAAEVISGLKHFFDPKVIPSIAYTDPEVAWV
GLTEKEAKEQGIAYETASFPWAASGRAIASDCSDGMTKLIFDKETHRVIGGAIVGVNGGE
LLGEIGLAIEMGCDAEDLALTIHAHPTLHESVGLAAEIYEGSITDLPNPKAKKKKK
NT seq 1431 nt   +upstreamnt  +downstreamnt
atgagtaacgaaatcaagactcaggtagtggtattaggttcaggccctgcaggttattcg
gcggcattccgtgcggctgacctaggactggagactgttatcatcgaacgtttcagcact
ttaggtggcgtttgtctgaacgtaggttgtatcccgtcgaaggcgcttttacacgtatct
aaagtgatcgaagaggcgaaagccgttgccgatcatggtgtggtttttggcgagccaaag
atcgacctggataagctacgcggcttcaaaaattcagttatcagccagttaacaagcgga
ttgggcggcatgtccaagatgcgtaaagtcgacgtagttaatggcttcggtaagtttacc
ggtcctaatactattgaagttgtcggtgaagatggcgttaaagtggttcatttcgaacag
gctattatcgctgcaggttctcgtcctatcgaactgccatttattccacattctgatcca
cgtgtttggaattcaaccgatgcgctggagcttaaagaagttccaggtaagctacttatc
atgggcggcggcatcattggcctagagatgggtacagtttacgcttctctgggtagccaa
attgacgtggttgagatgttggatcaactcattccagcagccgataaagatatcgtgcgt
gtctacaccaagaaggttaagaataagtttaaccttatgatgcagactaaggtcacagcc
gtagaagccaaagatgatggtatctatgtgactatggaaggtaagaaggctcctgctgaa
gctgtgcgttacgatgccgtgctagtcgcaatcggtcgtgcaccaaatggtaagtctatc
gatgccgagaaagctggaattaatgtggatgagcgtggcttcatcaatgttgataagcag
atgcgtaccaatgtcgctaacatctatgctatcggtgatatcgtcggtcaacctatgctt
gctcacaaaggtgtgcatgaaggccatgtggctgcagaagttatctctggcttgaagcac
ttcttcgaccctaaggttattccttcgattgcttatacagatcctgaagtcgcttgggtt
ggtctaaccgagaaggaagctaaagagcaaggtatcgcctacgagactgcaagtttccct
tgggccgccagtggccgtgcaatcgcttcagattgtagcgatggtatgactaagcttatt
tttgataaagagactcacagagtcataggtggcgctatcgtcggtgttaacggcggtgag
ctactgggtgaaattggtctggcgattgagatgggttgtgatgcagaagatcttgcattg
actattcatgctcatccaaccttacatgagtctgtaggccttgcggctgagatctatgaa
ggttcgatcactgatttgccaaaccctaaggcaaaaaagaagaaaaagtaa

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