Shewanella violacea: SVI_0354
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Entry
SVI_0354 CDS
T01206
Name
(GenBank) sensory box histidine kinase/response regulator
Organism
svo
Shewanella violacea
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Response_reg
HATPase_c
PAS_3
HisKA
PAS
PAS_4
PAS_9
PAS_8
dCache_1
MCP-like_PDC_1
PDE8A_N
Diguanyl_cycl_sensor
Motif
Other DBs
NCBI-ProteinID:
BAJ00325
UniProt:
D4ZEU5
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Position
422050..425757
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AA seq
1235 aa
AA seq
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MKSTEPDLQLKSPIQKNYNRAVFYTYIGVIIMALITAWFFFDGQKSQLMEKREEQVERRV
LQIDLLLESSIRAVKSLRNVAVDHLRLGELVRKERLPQYEKFDESGQYFTLEPSYAESGE
PFTNMGRITGAGSLNGRSEKFYQELEMLFELSLSFPVAIEAAPKASSIYYISKHRIMSYF
PWPSDEQRFRDELLNKNQFQLATPAMNPQRSVFWSPAYVDPGGKGLLTTLGVPIYLEDEF
IGSINLDMTLSSLAKQMHLYFKMPGTVILLDQNNNILSHSDDDKSEISRVFHISQKIPSE
LHSIPESELFDAHEGIIRNGYYIHSVALQNAPWRLLYLQDRDELFKDSWDKLELTFILVV
LALSVLVTIVHWQTRRSFVNPASRLLTHLESCSLEPRKPPEQISQGWEPWFQLVSRIFEE
NLQYTKHLAEQNRRLDKLVARRTARLKETTERREREYALLRSLLDSIPEAIVFKDKEGKY
LGCNKAAERMLGYTESELIGQESIKLTTQEQSVRIKAEDERVLAERTPLRYQEKVEFAGK
PVLLDTLKLPFYNRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWY
LDSKQIICNPAYYSMLGYKSNEFPALVSTLDDLIHPDDRIRVQEYREQYLGDPIGAFDVE
FRMRGKSGQYHWLLSRGRVVEYTVDNQPKRMVGTHKDITRHKSNEVALLEAKQDAESANL
SKSEFLANMSHEIRTPMNAIIGMLQLAQRTELTAKQEDYLDKAGFSAQSLLRIINDILDF
SKIEAGKLELEKVAFPLDKVLDHALDLNALKSQQKGVELLLYAPVTAGLILEGDPLRLGQ
VLINMLSNAVKFTQTGEIELGCEDVGERDHRITLKFWVRDTGIGISKEQQASLFDAFAQA
DGSTTRKYGGTGLGLSISKHLVSMMGGQMQVQSEMGVGSTFSFTISFEIAEEAEVKPMIV
PERLGSLKTLVVDDNPTALQIYATVMRDFHFEVDTAANGSEALYKLEKSSVDLLLLDWMM
PEMDGIQVIEELDRMVADGRLDKRPIVIMMTGYAAEPLKEDADRSNIYAMLQKPFKASAL
FDEIISAFTEEPKVNSVIEVEAEEVVDTHVGMVLLVEDNFINQQVATELLKSAGYEVDVA
DNGQIAIDMIAEKDFDAVLMDIQMPVMDGLTATKEIRKHFSLQELPIIAMTAHAMSGDRE
KSLSAGMNAHITKPIVLNELFDTLSYWIKQKDEVS
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgactgagccagatcttcaactgaagtcgccgatacagaaaaactataaccgt
gctgttttttatacctatattggcgtgattatcatggcgctgatcactgcctggttcttc
ttcgatggccagaaatctcagcttatggagaaaagagaggagcaggtcgagcgccgtgtt
ctgcagatagatctattgctggagtcgagtatccgagcggtaaagagtctgagaaatgtc
gcagtcgatcatctcaggcttggtgagttggtgcgtaaagagcgtttgcctcagtatgaa
aaattcgatgagagtggccagtattttaccttagagccaagctatgccgagagtggtgaa
ccttttaccaatatggggcgtatcacaggtgcaggctccctcaatggccgcagcgagaag
ttttatcaagaactggagatgttgttcgaattatctctctctttccccgtggcaatcgaa
gcggctcctaaagcctcatctatctattacatctctaagcataggatcatgtcctatttc
ccctggccatcggatgagcaaagattcagagatgaattgcttaataagaaccagttccag
ttagccacgccagccatgaaccctcagcgcagcgtattctggagcccagcttatgtggac
ccgggcggcaaaggcttgctgaccaccttaggtgtgcctatttatttggaagacgaattt
atcggctcgatcaatctggatatgaccttgtcctcgctggcgaaacaaatgcatctctat
tttaagatgccgggtacggttattctgctggatcagaataataatattctttcccacagt
gatgatgacaagtctgagatcagtcgtgtgttccatatcagtcagaagatcccctctgaa
ttgcactccattcctgagtcggaactgttcgatgcccacgaagggatcatcagaaatggt
tactacatccactcggtagccttgcagaatgctccctggcgcctgctctatttgcaggat
agagatgagttattcaaggattcctgggataagctcgagctgacatttatcttagtggta
ttggccctgtcggtattggtgaccatagtacactggcagacccgccgctcattcgtgaac
ccagcttcccgtctgttgacccatctggaatcttgttctttggagcctcgcaagcccccg
gagcagatatctcagggttgggaaccttggttccaactggtgagtcgaatcttcgaagaa
aacctgcaatataccaagcatctagccgagcaaaatcgaaggctagataagctggtggca
cgccgtacagcaagattgaaagagactacagagcggcgagagcgggaatatgccttgcta
agatctctgctggactccatccctgaggcgattgtcttcaaggataaagagggtaagtat
ttaggctgtaacaaggcagccgagcgtatgttgggctataccgagagtgaactcataggt
caggagtcgataaaactcactacacaagagcagtcggtgcgtattaaagctgaggatgaa
cgcgtactggcagagcgaactcccctgcgctatcaggagaaggtggaatttgccggtaag
cctgtgttactcgatacccttaaactgcccttctataatcggcgcggtgagctgttaggt
ttgattgctgtttggcgtgatgtgactcgagagtatgagtcggccgagcagttaagattg
tccgaggagcgttatcacttagccatggatgcggtagaagatggcttgtgggattggtat
ctggactcgaaacagatcatctgtaatccagcttactattctatgcttggctacaagagc
aatgagtttccggcattggtttctaccttagacgacttgattcatcccgatgacaggatt
cgggtgcaagagtatcgcgagcagtatcttggcgatcctatcggtgccttcgatgtcgaa
ttcaggatgcgcggcaagagtggccagtatcactggttactctcccgtggtcgcgtggtg
gaatacactgtcgataatcagccaaaacgtatggtgggtactcataaagatattactcgg
cataagagtaacgaagttgctctgcttgaggctaaacaagatgccgagtctgctaactta
tctaagagtgaatttctggccaatatgagccatgagatccgcacgcccatgaatgccatt
atcggcatgttgcagctggctcagcgtacagaactcacggctaagcaggaagattattta
gataaggccggcttctcggctcagtctctgctgaggatcatcaatgatattctcgatttc
tctaaaattgaggcgggtaaattagagctggagaaggtggcatttccgctggataaggtg
ctggatcatgccctagaccttaatgctctcaagtcgcaacagaagggagtcgagctgctc
ctctacgccccagtcacagcaggattaatcctcgagggtgatcccctgcgcttaggtcag
gtgctgatcaacatgctctctaatgcggtcaagtttactcagactggtgagatagagttg
ggttgtgaagatgtgggtgagcgtgatcatcgcatcacccttaagttctgggtccgtgac
accggcatagggatcagtaaggagcaacaggctagtttgttcgatgctttcgctcaagcc
gatggctctaccactcgtaagtatggtggcacaggtcttggtctctctatcagtaagcat
ctagtgtccatgatgggcggtcagatgcaggttcagagtgagatgggggtaggtagtacc
ttcagtttcaccatcagcttcgagattgccgaagaggccgaagttaaacctatgatagtg
cctgagcgtttaggcagtcttaagactctagtggtcgatgataacccgacggcactgcag
atctatgccacagtgatgcgtgatttccacttcgaagtggatactgctgctaatggttca
gaggcactttataagctggagaagtcatcggtagatcttctactgctcgattggatgatg
cctgagatggatggcattcaggtgatcgaagagctagatcgcatggtggccgatggtcga
ttagataagcgtcccatcgtcatcatgatgacaggctatgccgcagaacccttaaaagaa
gatgcggatcgctcaaatatttacgccatgctacagaagccgtttaaagcatcagccctg
ttcgatgagatcatcagcgctttcaccgaagagcctaaggtcaattctgtgatagaagta
gaagctgaagaagtggtcgatacacatgtgggcatggtcttgctggtagaggataacttc
atcaaccagcaggttgccaccgaactccttaagagtgcgggctatgaggtggatgttgcc
gataacggtcaaatagccatagatatgatcgccgagaaggatttcgatgcggtactcatg
gatattcagatgccggtgatggacgggttaaccgcaacaaaagagatcagaaagcacttt
agtctgcaggagctgcctatcatagccatgacggctcacgccatgtctggtgatagagag
aagagtctatcggcggggatgaatgctcatattactaaaccaatcgtcctcaatgagctg
ttcgataccttaagttactggattaagcagaaagatgaggtgagttaa
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