Shewanella violacea: SVI_0475
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Entry
SVI_0475 CDS
T01206
Name
(GenBank) transporter, putative
KO
K22051
miniconductance mechanosensitive channel
Organism
svo
Shewanella violacea
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
svo02000
]
SVI_0475
Transporters [BR:
svo02000
]
Other transporters
Pores ion channels [TC:
1
]
SVI_0475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MscS_TM
MS_channel_2nd
MS_channel_3rd
MS_channel_1st
Pur_DNA_glyco
Motif
Other DBs
NCBI-ProteinID:
BAJ00446
UniProt:
D4ZFJ7
LinkDB
All DBs
Position
complement(539242..542448)
Genome browser
AA seq
1068 aa
AA seq
DB search
MRTIFLLLIALTGFSAVAGSPLELNKRLGLTLPVSTDLTTEQKLAHIQHSIEEQALIENN
YLKLINNYQGHKLSLDRQLKEAKTPLPRSKNNGPTQQASLAYLRLSELKEIEAQLNTKAT
DLIKQHNRLPSDIASARQSLTQHQKNKIDDSDTNQDMLLKAQRQLYIQTLEALEAEQASS
QKRINLNQQQMLLVRYQLSQQESLIEEINKATAKQRQKKTDATIAKSLFETSAEQSPLTQ
QLSRLNLGYANKLKGLTKDTNLIVLTQETAENLYQVQAKQLTNIQQQVGLIKLNSAFGER
FLQMLQSLPAPPNQDKLEAQIAQARLTRYQLEQELTINNQQLVTNEPLTKIQSRLLTSQN
DLITQLLQSQDLYLSKLSDLRVIYEQLTQQNITLTSILNEHLFWVPNAKSIDKLWFTDLF
QSVKWLMGQSVWSDISVSLDEQSEYWSWWIILFVLCLVTQDLLTPKFKSVMAHDITFVGN
VTQDQFSYTFSALSNSLLYSVIKPLPVIAAGAILLFSSLNLTAAIGMGVLVIGLLYLFYR
FTYLLALEQGLLIGHFKSEASIIRQGQLRFKTFIIMAIPFFGVMGFTEFIDNSVLRNSIG
RGAFIIFSIFLFGFYRDILSLSKKHKHQHQDDKNKKLLQRLLWGVLLLIPPVCAILAFRG
YYYTAFQVLLQLQLSLLLSLGFMLLYQLIKRWMFIERRRIAFDRAKARRAEILLQRERER
DEEPQNNTEPLDTYEEPGVDLETMASQSLGLVRSLLLLAFLASLIGLWSQTHTALFSLLD
DVTLWTSNTLVNGIEQQLPITLKSLFLGLIIVGFSLMIATNLPGLLELTILQRLDLSQGT
GFAITTVSRYLVVFFGILSGFSTLGMEWSKLQWLVAALSLGLGFGLQEIFANFISGLIIL
FEKPVRIGDTVTIRELTGNVSKIQIRATTIVDWDRKEIIIPNKAFITEQLINWSLSDPIT
RVIVYVSVARDSDPARVEAALYQAVEGCEDALESPEPEVWFAGFGQHTQDYEVRAYAKDM
NTRWPLRHTLHKAINKKLQENQLELAYPQLEVHIKNTQSKETQGLIRS
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgcgcactatttttctgcttctcattgcattaactggcttcagtgccgtcgccggttct
ccactcgagctcaataaacgtctgggactcactctgccagtttcgaccgatttaacaacc
gagcagaagctcgcacatattcagcatagtattgaagaacaagcgttaatagaaaacaat
taccttaagttgatcaacaactaccaagggcataagctcagcctagatcggcaactgaaa
gaggctaagacaccgctccctagatccaagaataatggccccactcagcaagcttcactc
gcctatttaagactctctgaactcaaagaaatagaagcccaactcaatacaaaagcgact
gatttaatcaagcagcataaccgactaccgtcagatatagcatctgctcgacaatctttg
actcagcatcaaaaaaataaaatcgatgactctgacaccaatcaagatatgctacttaag
gcacagcgtcagctctatattcagactctggaggcattagaggctgaacaggcaagtagc
caaaaacgtattaacctcaatcagcagcagatgttactggtcaggtatcagctatcacaa
caagagagcctgatcgaagagatcaataaggccactgctaagcagagacaaaagaaaaca
gatgccactatagccaagagtctgtttgagacttcagccgagcaatccccactgacccaa
caactgagccgattaaatttaggttatgccaataagctaaagggcctcactaaagataca
aatctaattgttctcacacaagaaactgccgaaaacctctatcaagttcaagcaaaacag
ctgaccaatatccaacaacaagtaggcttgattaaattaaattctgcatttggcgagcgc
tttttacagatgctgcaatctctacccgcaccgccaaatcaagataaactagaagcacaa
atagctcaggcaagactgacaaggtatcaacttgaacaagagttgacgataaacaaccag
caactggtaaccaatgagcctttaaccaagattcaatctaggctgctcacctcacagaat
gacttgatcacacagctcttgcagagccaagatctttatttgagtaagctctcagattta
agagtgatttatgagcagttaacccaacagaacatcaccctaacaagcattcttaacgag
caccttttttgggtaccgaatgctaaatccattgataaattatggttcaccgatcttttc
cagagtgtgaaatggcttatgggccaatctgtttggtctgacatatcagtttccctcgat
gaacaaagtgaatactggtcttggtggatcatcttgttcgtgctctgtttagtcactcaa
gatctactaacacctaagtttaagtcagtcatggctcacgacatcacatttgtcggtaat
gttacccaagatcagtttagctacaccttcagtgccctaagtaactctttactctacagc
gtgattaaaccactacctgtgatcgccgctggtgccatcttgcttttctccagtctgaac
ttaacagcagctatcggcatgggagtactagtcataggcttactctacttgttctaccgt
tttacctacctactggcactggaacagggattactcataggtcactttaaaagtgaagca
agtataatcaggcaaggtcaactcagatttaaaacctttatcatcatggcgatacctttc
tttggggtcatgggattcaccgaatttatcgataattcagtactgagaaatagtattggc
cgaggcgccttcattattttcagtatcttcctatttggcttctatcgggatattttatcc
ttatctaagaagcacaaacaccaacaccaagatgacaagaataaaaaattactccaaaga
ttgttgtggggagtgctgctactcatccccccagtctgcgccatcttagcttttagaggt
tattactacacagcgtttcaggtattactgcaacttcaactttccctgttactgtcatta
ggcttcatgttgctttatcaactgataaaacgttggatgttcatcgaaaggagacgcata
gccttcgatcgtgctaaagccagacgtgcagagatattacttcaacgtgaacgtgaacgt
gatgaagagccacaaaataataccgagcccctagacacctatgaagagccaggtgtcgat
ctagaaaccatggccagtcaatctctgggactggtacgttcattattactattggctttc
ttagcaagtttaatcggcctttggagccagacccacactgcattattctcattgctcgat
gatgtgactctctggaccagtaacaccttggttaacggcatagagcaacagctccctatc
accttaaaatcactcttccttgggctgatcatagttggtttctcacttatgatagccacc
aacctacccggtttactcgaactaaccatattacaacgactggatttgagccaaggaaca
ggctttgccatcaccacagtgagtcgttatctggtggtattttttggtattttgagtggt
ttttcaaccttaggcatggaatggtccaagttacagtggctggtcgcggcactctcattg
ggactgggttttggattgcaggaaattttcgctaacttcatctcaggcttgatcatcttg
ttcgagaaaccggtgagaattggtgacactgtgaccataagggagctcactggcaatgta
agtaagattcagatccgtgcaacgactatcgttgactgggatagaaaagagatcattatt
cccaataaagccttcattaccgaacaactcatcaactggtccctctctgatccaatcaca
cgcgtcatagtatatgtctctgtcgcgagagactcagatcccgccagagtcgaagctgcg
ctatatcaagccgtcgaaggatgtgaagatgcattagaaagccctgagcccgaggtctgg
tttgcgggatttggacaacacacccaagattatgaagttcgtgcctatgccaaagacatg
aatactcgttggcctcttcgtcatacattgcataaagccatcaataagaagctgcaagaa
aaccaacttgaactcgcatacccgcaactagaagtgcacataaaaaacactcagagcaaa
gaaacccagggactgatcagaagctaa
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