Shewanella violacea: SVI_0523
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Entry
SVI_0523 CDS
T01206
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
svo
Shewanella violacea
Pathway
svo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SVI_0523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svo03019
]
SVI_0523
Enzymes [BR:
svo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SVI_0523
Messenger RNA biogenesis [BR:
svo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SVI_0523
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
DUF3110
DUF8086
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BAJ00494
UniProt:
D4ZFP5
LinkDB
All DBs
Position
complement(616314..617750)
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AA seq
478 aa
AA seq
DB search
MSFTSLGLSAPILKAVASKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL
ELLSRGNRAQAKKVRALVLTPTRELAAQVAESVETYGKYLPLKSAVIFGGVGIGPQISKL
GKGVDILVATPGRLLDLYNQGAVNFNQLEVLILDEADRMLDMGFIHDIKKILRVLPAKRQ
NLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATAKSVEQYIYMVDQKQKTAALIHLIKQ
NDWKQVLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKNGAVRVLVAT
DIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSGDESKLLRDIER
LIKQNIPRKEVEGFVPTQIVAETDLNDSKHGQNRGPRNANGRGNGRNGNSGSRSGSRDSR
SSQGKVEHKDGQRSGEAARGHKPNDSNASHRRSSSQARTTNSASSAASKPSNTSIWGK
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgagttttacctccctgggtttatccgctccgattttaaaagccgtagccagtaaaggc
tatgagacaccttcgccaattcaagctcaagcgatccccgcagtgctcgaaggcaaggat
gtgatggcagcagcccagactggcacaggtaaaactgcaggcttcactctacctctatta
gagctgttaagcagaggcaatcgtgctcaagctaaaaaagtacgcgccctggtattaaca
ccgactcgtgagcttgccgctcaagtagccgagagtgtcgaaacttatggtaagtatcta
ccacttaaatcagcagtgattttcggtggcgtaggcatagggccacaaatttctaaacta
ggtaaaggcgtcgacatattagtcgccacacctggtcgtttactggacctatataaccaa
ggtgcggtgaacttcaaccaacttgaagtcctgatcctcgatgaagccgatcgcatgtta
gatatgggcttcattcatgacatcaaaaagattcttagggtattaccagctaaacgtcag
aacctgatgttctcggctaccttctccgacgatattcgtaaactggctaaaggcctagta
aacaatcctgtcgagatatctgttaccccacgtaatgccacggcaaaatccgttgagcaa
tatatctatatggtcgatcagaagcagaagactgcagcgctgatccacctgatcaagcaa
aacgactggaagcaggtattagtatttagccgtactaaacatggtgcaaaccgaatcgcc
aagaacctagaagctaatgaccttactgcagccgctattcatggtaataagagccaaggc
gcacgtacaaaggcactggcgaacttcaagaatggcgccgttcgagtattagtcgcaacc
gatatcgcagctcgtggtattgatatcgaccaactgcctaacgtagttaacttcgatctg
cctaacgtaccagaagattatgttcatcgtataggccgtactggtcgtgccggtgctagt
ggtcaagcggtatcactagtcagtggtgacgagagcaagcttctcagagatatagagcgc
ttgattaagcaaaatataccgcgtaaagaagttgaaggttttgtgccgactcaaattgta
gccgaaaccgatctcaatgacagcaaacatggtcaaaaccgtggtccacgtaatgccaat
ggccgcggtaatggccgtaacggtaattcgggctctcgttcaggctctcgcgattcgcgc
agcagccaaggcaaggtcgagcataaagacggccaacgcagtggtgaagccgctcgcggt
cataagccaaatgatagcaacgccagtcaccgtagatctagctctcaggctcgcactact
aatagcgcgagttcagcagcctctaagccatcaaataccagtatctggggaaagtaa
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