Shewanella violacea: SVI_0732
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Entry
SVI_0732 CDS
T01206
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
svo
Shewanella violacea
Pathway
svo03410
Base excision repair
svo03430
Mismatch repair
svo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SVI_0732 (recJ)
03430 Mismatch repair
SVI_0732 (recJ)
03440 Homologous recombination
SVI_0732 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svo03400
]
SVI_0732 (recJ)
DNA repair and recombination proteins [BR:
svo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SVI_0732 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SVI_0732 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SVI_0732 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BAJ00703
UniProt:
D4ZGA4
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All DBs
Position
870921..872645
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AA seq
574 aa
AA seq
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MIHKIVRRSKVDDTHLPDSFSPLLKQIYASRGTTAEECDLTLSRLLRPNTMKGLDIASKI
IADGIRDNRSILIMGDFDADGATSTCVCLLALKMMGASKIDYLIPNRFDFGYGLSPEIVA
VAHSKGAELLITVDNGISSIEGVAAAKALGMQVVITDHHLPGKTIPDADAIVNPNQVDCG
FASKSIAGVGVAFYLMSALRAELRQRNWYQEQGISEPNLAHLLDIVALGTVADVVALDGN
NRILVEAGLKRVRAGRCRAGITALLEVAKRNPAKIVAADFGFAVGPRLNAAGRLDEMALG
VETLLCDDMMSARRMAAELDGLNAERRDLEADMQQEALKSLESVELNEASLPWGIALFQE
DWHQGVIGILASRIKDRYHRPVIAFADAGEGEIKGSARSIKGLHMRDLLELINSRHPGMI
LKFGGHAMAAGLSLRGKDFETFEQAFDLAVRELLKPEQLTGEFVTDGDLSAADMNLTVAS
ELRNAGPWGQEFPEPLFDGHFKVIQQRIVGEKHLKLVLETECGQTMLDAIAFNIDLKTWP
DATIEHAQVVYKLDVNEFRGNQTVQLMVEQIEPM
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
gtgatccataagatagtccgacgttctaaggttgatgacactcatctgccagattccttc
tctcctctgttaaagcagatctatgccagccgtggtactactgccgaggaatgcgatctg
actctgtcacgcctactacgccctaataccatgaaaggcttggatatagcctcgaagatt
atcgccgatgggatccgagataatcgctcaattttgatcatgggtgatttcgatgccgat
ggtgcgacctcgacctgtgtgtgcttgttggcactcaagatgatgggcgcgagcaaaatt
gattacctgatccctaatcgcttcgatttcggttatggcttgagcccggagattgtcgct
gttgctcatagtaagggtgcagagctgctgatcacggtagataacggcatctcctcaatc
gaaggtgttgccgctgctaaggcgctgggcatgcaagtggtgataaccgatcatcacttg
ccaggtaagacgattccagatgccgacgccatagtgaatcccaatcaagtggattgtggc
ttcgccagtaaatctattgctggtgtcggagtggctttctatctgatgtcggcattgcga
gctgagcttagacagcgcaattggtatcaagagcaaggtattagcgaacctaacttagcg
catctcctcgatatcgtcgccctgggcacagttgctgatgtggtggccctcgacggtaat
aatagaattttagtggaagcgggattaaagagggtgagggcaggtcgttgccgcgccggg
atcacagccttattagaagtcgccaaacgtaatccggctaaaatagtcgctgcagatttc
ggtttcgcagtaggcccaaggctcaacgctgcgggacgcctcgatgagatggcccttggg
gtcgagaccttgctttgtgatgacatgatgagtgccagacgcatggcggccgagctcgat
ggcttaaatgccgaaagacgggatctcgaagccgatatgcagcaagaagcgctgaagagt
ctggagtctgtcgagctcaatgaagcgagtctaccctggggcatagccctttttcaggaa
gactggcatcagggggttatcggtattttggcttccagaatcaaggacagatatcacagg
cctgtaattgcatttgccgatgcgggagaaggtgagataaagggctcggcgcgttcgata
aagggcctgcatatgcgcgaccttctagaacttatcaatagccgtcaccctggaatgata
ctcaagtttggtggtcatgccatggctgcgggactctctttgagaggcaaagacttcgag
accttcgagcaggcattcgatctcgccgtgcgcgagttattaaagcctgagcagcttaca
ggtgagttcgtgactgacggggacttgtccgctgcagatatgaacttaactgtcgcttct
gagcttagaaatgccggtccctggggccaagagttccctgaacctctgttcgatgggcac
tttaaagttatccaacagcgtattgtcggtgagaagcaccttaaactggtactggaaacc
gaatgcggtcaaaccatgttagatgccatcgcctttaatatcgatcttaagacctggccc
gatgccaccatagagcatgctcaagtggtttataaactcgacgtgaacgagtttagaggt
aatcagacggtgcagctgatggtagagcagatagagccaatgtag
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