Shewanella violacea: SVI_0888
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Entry
SVI_0888 CDS
T01206
Name
(GenBank) LysM domain protein
KO
K19235
L,D-transpeptidase YbiS
Organism
svo
Shewanella violacea
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
svo01002
]
SVI_0888
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
svo01011
]
SVI_0888
Peptidases and inhibitors [BR:
svo01002
]
Cysteine peptidases
Family C82
SVI_0888
Peptidoglycan biosynthesis and degradation proteins [BR:
svo01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
SVI_0888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Ldt_C
LysM
Motif
Other DBs
NCBI-ProteinID:
BAJ00859
UniProt:
D4ZGR0
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All DBs
Position
1035556..1036479
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AA seq
307 aa
AA seq
DB search
MMRILLLFILSVIPGISLANVYDLPEKGSSLIGELQEHLVLKGDYFQTISKQYNVGILEL
MESNPGVDPFLPTPGTKLIIPTQMLLPDVPRKGIVLNLPELRLYYFSKNGKQVHVFPVGI
GRVGRETPEMVTKIKARIPNPSWTPPASIRKEHLERGEILPPVVAAGPDNPLGNYAMQLS
YGDGSYLIHGTNKDFGIGMRVSSGCVRLNPDDIEWLFNQTKYGDPVRVINQTVKISTEPD
GRHIIEVHSALSKSDSDIQQEKPVTMTAAIVNFISQEGIDSFKANDALLAQNGLPVNIEL
PEPSLSE
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgatgagaatattgctgttgttcatcttaagtgtaattccaggcattagtttggccaat
gtctacgatctgccggaaaaaggcagtagtctcatcggcgaacttcaggagcacctggta
ctgaagggggattattttcagacgatttccaaacagtacaatgttggtattctggagcta
atggaatcaaatcctggtgttgacccatttttacctactcctggcactaaactcattata
ccgactcagatgttgcttcccgacgtaccaagaaaagggatagtgctcaatctaccggaa
ttgagactctactacttttctaaaaatggtaagcaagtccatgtatttcctgtgggtatc
ggccgtgtaggccgtgaaactcccgagatggtcactaagattaaggccagaattcctaat
ccaagttggacgcctccggcgagtattcgcaaggagcatctggaacgcggtgaaatcctg
cctcctgtggtagcggctggaccggataacccattgggtaactatgccatgcagctttct
tatggtgatggtagttacttgatccacggtacgaacaaagactttggtatcggcatgcgt
gttagctcaggttgtgttcgtctcaatccggatgatatcgagtggctgtttaatcagact
aagtatggcgatcctgtgcgggtgatcaatcagacggttaagatctctaccgagccagat
ggacgtcacatcatagaggtgcattcggctttatctaagtctgactcagatatacagcaa
gaaaaaccggtgactatgactgcggctatcgttaactttattagccaggaaggcatagat
agttttaaggctaatgatgcactgctggcacaaaatggtttacctgtgaatatagagctg
ccagagcccagcctaagcgagtaa
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