Shewanella violacea: SVI_1248
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Entry
SVI_1248 CDS
T01206
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
svo
Shewanella violacea
Pathway
svo03030
DNA replication
svo03430
Mismatch repair
svo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SVI_1248 (dnaE)
03430 Mismatch repair
SVI_1248 (dnaE)
03440 Homologous recombination
SVI_1248 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
svo03032
]
SVI_1248 (dnaE)
03400 DNA repair and recombination proteins [BR:
svo03400
]
SVI_1248 (dnaE)
Enzymes [BR:
svo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SVI_1248 (dnaE)
DNA replication proteins [BR:
svo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SVI_1248 (dnaE)
DNA repair and recombination proteins [BR:
svo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SVI_1248 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
BAJ01219
UniProt:
D4ZHS0
LinkDB
All DBs
Position
1455732..1459205
Genome browser
AA seq
1157 aa
AA seq
DB search
MSDPSFVHLRVHSDYSMSDGLAKVKPILAKVTELGMPAVALTDQTNLCGLVKFYGACHGA
GVKPIIGADFWVRVPGFDKDLCSVTVIAMDNDGYLNLTLLISDAYLRGHINDRAVIDQEW
LIKYSNGLLLLSGGRHGDVGRALLKGNKPQVDSLVEFYQTHFPDRYYLELLRTGRPDEET
YLHLAVELAQEKGLPVVATNQVVFNSPEFFDAHEIRVAISDGFTLADPRRPKKYSDQQYF
KSSEEMCALFEDIPEAIANTVEIAKRCSVTVRLGEYFLPNFPTGELSIEDFLVKVSEDGL
ENRLEFLFPDPEVRAQKRPAYDERLDIELKVINQMGFPGYFLIVMEFIQWGKDQDIPIGP
GRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFCMDRRDEVIDHVAE
LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMVPAEPGMTLAKAFEVEPA
LQESYDGDEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTKITDFAPIYCDSEGKNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKRKALGKEPVRIESIPLDDKKSFKLL
QRYETTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSFPDAEYQHESLKWVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKKPEEM
AKQRGTFEEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMSADMDNTDKIVILVDECERMGQPLLPPDVNKGLLKFNVDEEGKIVYGIGAIKG
VGDGPVESILAARKDGPFKDLFDFCARVDLKKLNKRIMEKLICAGALDSLGPHRAAMMAT
LPAAVRAADQNAKAEAIGQHDMFGLLNSDTEDIKQQFVQCTPWPDKIWLEGERETLGLYL
TGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVIATRVMMTKRGSKMGLVTLDDK
SARLEVMLFTEAFEKFNHLLEKDRILIIEGEVSFDDFSGGNRMTARNIIDMGEARNHFAS
ALEVDIDSDSIDETWLDSFKQVVEPWKKGSVPIIVNYAQPQAKAQLKLGDNWRVNPTDEL
MLALETLTGAGKVRILF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatcccagttttgtgcatctacgcgttcacagcgattattccatgtctgatggc
ctggccaaagtgaagcctatcttagctaaggtgacagaacttggcatgccagcagtcgcg
ttaaccgatcagaccaacctatgtgggctagttaaattttatggtgcctgccatggtgcg
ggtgttaagcccatcataggtgccgatttttgggtaagagttcccgggttcgataaagat
ttatgttcggtcactgtgatagccatggataatgacggatatttgaatttaactttatta
atcagtgacgcttacctgaggggtcatataaacgatagggctgttatcgatcaagagtgg
ctgattaaatacagtaatggattactactactctcgggcggacgtcatggagatgtcggt
agggcgctgttaaagggtaataagccgcaagtcgattcattagtcgaattttatcagact
cattttcccgatcgttactatctggaacttttacgtactggccgacccgatgaggagact
tatcttcatctggctgtggagctggcacaagagaaaggtttgcctgtggtggcaaccaat
caggtggtgtttaatagtccagaattcttcgatgcccatgagatccgtgtcgctatttca
gacggtttcactttagccgacccacgtcgtccgaagaaatacagtgatcaacagtatttt
aagagcagcgaagagatgtgtgcgctgtttgaagacattcccgaagccattgccaacaca
gtagagatagccaagcgctgtagtgtgacagtgcgtttgggtgagtattttctgcctaac
ttcccaacgggtgaactaagcatcgaagatttcctggtgaaggtgtcggaagatggcttg
gagaatcgcttagaatttctatttcccgatccagaggtcagggcacagaagcgtcctgca
tacgatgaacgtctggatatagaacttaaggtgattaaccagatgggcttccctggctac
tttctcatcgtgatggaatttattcagtggggaaaagatcaggatattccaatcggtccg
ggtcgtggatctggagcagggtccttagtggcctatgccctcaagatcaccgatctcgac
ccgctggaatatgaactcctgttcgagcgtttcctcaacccagaacgtgtttctatgccg
gatttcgatatcgatttctgcatggacagacgagatgaagttatcgaccatgtagccgag
ctctatggccgtgatgctgtttctcagatcatcaccttcggtaccatggctgctaaggcc
gttatacgagatgtgggccgagtattgggccatccctatggctttgttgaccgtatctct
aagatggtgccagccgagcctggtatgactctggctaaagccttcgaagtagagcctgct
ctacaggagtcttacgatggtgatgaggaagtaaaagatcttatcgacatgtgtcgaata
ttagaaggtgtcacgcgtaacgcgggtaagcatgcggggggcgtggtgatatcgccgacc
aaaattaccgattttgctcccatctactgtgactccgaagggaaaaacccggttactcaa
ttcgataagaatgatgttgagactgcgggcctggtcaagtttgacttcttgggactgaga
accttgaccatcatcgactgggcattgcagatgatcaatcccaaacgtaaggcgttgggt
aaagagcctgtgcgtatcgagtcgatacccctggatgataaaaagagtttcaagctgcta
cagcgttacgagactacggcggtattccagttggaatctcgtggtatgaaagatttgatc
aagcgtctgcaaccggatagcttcgaagatatgattgctctggtggccttgttccgtccg
ggtccacttcagtccggcatggtagataactttattgaacgtaagcacggtcgagaagaa
gtctcttttcccgatgccgagtatcaacatgagtctctcaagtgggtactcgaacccacc
tacggcattattctctatcaagagcaggtgatgcagatagcccaggtgctcgcgggctac
tcacttggtggcgcggatatgctgcgtcgagccatgggtaagaagaaacccgaagagatg
gccaagcagcgtggtaccttcgaagagggcgccatcaataatggtatcgacggcgaactg
tcgatgaaaattttcgatctggtggagaaatttgccggttacggatttaacaagtctcac
tcggcagcctatgcactggtttcctatcagacactctggctaaagacccattatccggcc
gagtttatggcggcggtaatgtctgccgatatggataataccgataagatagtcatcttg
gtggatgaatgtgaacgtatgggtcaacctctgttgccaccggatgttaacaagggtttg
ctaaaattcaatgtcgatgaagagggcaagattgtctacggtatcggcgccatcaaggga
gtgggtgatggcccagttgagtcgatactggccgcgcgtaaggatggtcctttcaaagat
ctgttcgatttctgtgcgcgggtagaccttaaaaagttaaataagcgcatcatggaaaaa
cttatctgcgccggagccttggatagcttagggcctcatcgcgccgccatgatggcgact
ttacccgcagccgtacgcgccgcggatcaaaatgccaaggctgaggccatcggccagcat
gatatgtttggtttgctcaatagcgataccgaagatatcaagcaacaatttgtgcagtgt
actccttggcccgataagatctggcttgagggggagcgtgaaaccttaggtctttacctc
acaggtcacccgataaatcagtatctcaaagagctgaagcattacacatcgggtcgactc
aaggatgtacatccaacagagcgtggcaagacaatgaaagccgccggcctggttattgcg
acgcgagtgatgatgaccaagcgtgggtctaagatggggctagtgactctggacgataag
agtgctcgcctggaggtgatgctatttaccgaggcatttgagaagtttaaccacctactg
gaaaaagatcgcatcttgattatcgaaggtgaggtcagtttcgatgatttctccggtggc
aatcgtatgactgcccgaaacatcatagatatgggagaggcgcgtaatcatttcgccagt
gccctagaggttgatatcgacagtgactcaattgatgaaacttggttagatagtttcaag
caagtggtggagccgtggaaaaagggctcagtacccatcatagtcaattatgcccaacca
caggctaaggcgcagcttaagctaggggataactggagagtgaatccgacagatgagctc
atgctggcgctggaaaccttaaccggagctggcaaggtgaggatcttgttctaa
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