Shewanella violacea: SVI_1449
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Entry
SVI_1449 CDS
T01206
Symbol
fliA
Name
(GenBank) RNA polymerase sigma-27 factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
svo
Shewanella violacea
Pathway
svo02020
Two-component system
svo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SVI_1449 (fliA)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SVI_1449 (fliA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svo03021
]
SVI_1449 (fliA)
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
svo02035
]
SVI_1449 (fliA)
Transcription machinery [BR:
svo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SVI_1449 (fliA)
Bacterial motility proteins [BR:
svo02035
]
Flagellar system
Flagellar assembly proteins
Stator
SVI_1449 (fliA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
UPF0122
HTH_23
HTH_10
DUF3326
MenC_N
Motif
Other DBs
NCBI-ProteinID:
BAJ01420
UniProt:
D4ZIC1
LinkDB
All DBs
Position
1659168..1659887
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AA seq
239 aa
AA seq
DB search
MSKASAYTCLDNKALIVEQYAPLVKKIAHHLLARLPASVQIDDLLQAGMMGLLEASSKFD
GNKGAKFETFAGIRIRGSMLDEIRRGDWVPRSVHRNQRRVAQVIDELEQELGRDAKDAEI
AQRLDMTLNEYHHILNDVSVGKVIGIEDLGVSVDVISHDNGVNDDTFESIAEGEFHLALV
AAIKLLPERDGLVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKAKLKHWTKK
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaagcctctgcgtatacttgtttagataataaagctttaatcgttgaacaatac
gcaccgcttgtgaaaaaaatagctcaccatttactcgctcgtttaccagcctctgtgcaa
atcgatgatttactacaggctggtatgatggggttattggaagcatcgtcaaaatttgat
ggtaacaaaggggctaagtttgaaacattcgcgggcataagaattcgcggatctatgctt
gatgagattcgtcgtggggattgggtacctagatctgtccatagaaaccagagacgagtc
gcccaggttattgatgagcttgagcaggagcttggtagagatgccaaagatgccgagata
gcccaaagattggacatgaccttaaatgaatatcatcatattttaaatgatgtttcggta
gggaaagtaattggcattgaagatttaggtgtatcggtcgatgttattagtcacgataac
ggggttaatgacgatacatttgagtcgattgcagaaggtgagtttcatttagccttagtt
gcagcaattaagttattgccagaaagagatggactggttttgtcgctttattacgatgaa
gctttaaatttaaaagaaataggggccattcttgaggttagtgagtcacgggttagccag
attttaagtcaggcaatgcttagactaaaagctaaacttaagcattggacaaaaaaataa
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