Shewanella violacea: SVI_1821
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Entry
SVI_1821 CDS
T01206
Symbol
trmU
Name
(GenBank) tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
KO
K00566
tRNA-uridine 2-sulfurtransferase [EC:
2.8.1.13
]
Organism
svo
Shewanella violacea
Pathway
svo04122
Sulfur relay system
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04122 Sulfur relay system
SVI_1821 (trmU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
svo03016
]
SVI_1821 (trmU)
Enzymes [BR:
svo01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.13 tRNA-uridine 2-sulfurtransferase
SVI_1821 (trmU)
Transfer RNA biogenesis [BR:
svo03016
]
Prokaryotic type
tRNA modification factors
Thiolation factors
SVI_1821 (trmU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_Me_trans
tRNA_Me_trans_M
tRNA_Me_trans_C
NAD_synthase
ThiI
QueC
Asn_synthase
ATP_bind_3
DUF7411
Motif
Other DBs
NCBI-ProteinID:
BAJ01792
UniProt:
D4ZJE3
LinkDB
All DBs
Position
complement(2095243..2096373)
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AA seq
376 aa
AA seq
DB search
MAAIEPTALNNKKVIVGMSGGVDSSVSAYLLLKQGYQVEGLFMKNWEEDDTDEYCAAADD
LKDAQAVCDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIICNKEIKFKAFLEF
ADEILDADFIAMGHYVRRSDETGQSRMLRGIDGNKDQSYFLYTLSHEQIARSLFPVGELE
KSEVREIAKEMGLITHDKKDSTGICFIGERKFTDFLSTFLPAQPGDIETAEGEVIGKHQG
LMYHTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQGGTHPRLMSLGFYADQLHW
VDRKGPVDEAKITVKTRYRQRDVACTLFLETNDKGEDTIRVLFDEPVAAVTPGQSAVFYS
GELCLGGGIIDSLIRE
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaatcgaacccaccgcactcaacaataaaaaagtcattgtcggcatgtccggc
ggtgtcgactcatccgtctcggcttacttgctacttaagcaaggttatcaagtcgaaggc
cttttcatgaaaaattgggaagaagatgataccgatgaatattgcgccgctgcagacgat
ctaaaagatgcccaagctgtatgtgacaagcttgggatcaagcttcatacggtcaacttc
gcctcggaatattgggacaatgtgttcgaatacttcctcgccgagtacaaggctggtcga
acacccaatccagatatcatctgcaacaaagagatcaagttcaaagctttccttgaattt
gccgatgaaattctcgacgccgattttatcgccatggggcattatgtacgccgtagcgat
gaaacaggtcaaagccggatgttacgtggcatcgatggcaataaagatcaaagctatttt
ctctacacactcagtcatgagcagattgcccgctctctcttccccgttggcgaactcgaa
aagagtgaagttcgagaaatagccaaagagatgggacttatcacccatgataagaaagac
agtaccggaatttgttttatcggcgaacgcaagttcaccgactttttaagtaccttctta
cctgcacagcccggcgatatagagactgcagaaggtgaagttatcggtaagcatcagggt
ctcatgtaccacaccttaggccagcgcaagggtctgggcataggtggaatgaagaacagc
aatgacgatccttggtatgttgtcgataaagagatggacagaaatgtcttagttgtcggc
caaggtggcactcacccaagattaatgtccctaggcttctatgccgatcagctccactgg
gtcgacagaaaaggtccagtcgatgaagccaaaatcacggtgaagacccgttatcgccaa
cgagatgtggcttgtactctattccttgaaaccaatgataaaggcgaagacaccataaga
gtgctgttcgatgaaccagtcgcagccgtgactccgggtcagtcagccgtcttctattct
ggtgagctctgcttaggcggcggcatcatcgactcattaatcagagaataa
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