Shewanella violacea: SVI_1942
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Entry
SVI_1942 CDS
T01206
Symbol
dnaQ-1
Name
(GenBank) DNA polymerase III, epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
svo
Shewanella violacea
Pathway
svo03030
DNA replication
svo03430
Mismatch repair
svo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SVI_1942 (dnaQ-1)
03430 Mismatch repair
SVI_1942 (dnaQ-1)
03440 Homologous recombination
SVI_1942 (dnaQ-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
svo03032
]
SVI_1942 (dnaQ-1)
03400 DNA repair and recombination proteins [BR:
svo03400
]
SVI_1942 (dnaQ-1)
Enzymes [BR:
svo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SVI_1942 (dnaQ-1)
DNA replication proteins [BR:
svo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SVI_1942 (dnaQ-1)
DNA repair and recombination proteins [BR:
svo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SVI_1942 (dnaQ-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
BAJ01913
UniProt:
D4ZJR4
LinkDB
All DBs
Position
complement(2227952..2228572)
Genome browser
AA seq
206 aa
AA seq
DB search
MSSLAANSVIILDFETTGLSPNQGDRAIEIGAVRIQDGIVVDTFQELMNPGFRVSGFIEG
YTGISNAMLANAAPCEEVMARFADFIGDHNLVAHNASFDQRFLDAELDGINLSYGGKFAC
SMLIARRLYQDAPNHKLGGLVEYKQIENDGVFHRALADSEMTAKLWLQMLDDMRSEHGIT
APSFTLMQDLSRKPKAQVNRFLSTAN
NT seq
621 nt
NT seq
+upstream
nt +downstream
nt
atgagctctctagcagccaactcagtcataatcctcgatttcgagaccactggcctctcc
cccaaccaaggtgatagagccatcgaaattggtgcagtaagaatacaagatggcatagtc
gtcgatacatttcaggaactgatgaacccaggctttcgtgtcagtggattcattgaaggt
tacacaggtatttccaatgccatgttggctaatgcagccccgtgtgaagaagtgatggca
cgtttcgccgacttcattggcgaccataatctagtggcacataatgcctccttcgatcaa
cgcttcttagatgctgaactcgatggaattaacttaagctatggcgggaaatttgcttgt
tccatgttgatagcacgtcgtttataccaagacgcccccaatcataaactcggtggtctg
gttgaatataaacagattgaaaatgatggtgtatttcaccgggcattggccgattctgag
atgacagctaagctctggctgcagatgcttgatgatatgcgcagcgaacatggcatcaca
gcgcccagttttaccttgatgcaggacctatccaggaaacctaaggctcaggtaaatcgc
ttcttaagtacggccaattaa
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