Shewanella violacea: SVI_2350
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Entry
SVI_2350 CDS
T01206
Symbol
ruvB
Name
(GenBank) Holliday junction DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
svo
Shewanella violacea
Pathway
svo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SVI_2350 (ruvB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svo03400
]
SVI_2350 (ruvB)
Enzymes [BR:
svo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SVI_2350 (ruvB)
DNA repair and recombination proteins [BR:
svo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SVI_2350 (ruvB)
RecFOR pathway proteins
SVI_2350 (ruvB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
AAA_16
TIP49
AAA_3
AAA_14
AAA_22
Mg_chelatase
AAA_24
nSTAND3
Bac_DnaA
AAA_18
AAA_2
Rad17
AAA_17
AAA_25
NTPase_1
NB-ARC
RNA_helicase
TsaE
AAA_11
IstB_IS21
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
BAJ02321
UniProt:
D4ZKX2
LinkDB
All DBs
Position
complement(2696552..2697571)
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AA seq
339 aa
AA seq
DB search
MIEADRIIHAEPQGVEAYEEQIDRAMRPKLLDEYTGQDATRAQLKVFIQAAQNRGEALDH
MLIYGPPGLGKTTLALIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEPGDVLFIDEIHR
LSPVVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGALTSPLRARFGI
PLRLEFYNVKDLSTIVTRSAKVLELPIDDEGSLEVARRSRGTPRIANRLLRRVRDYAEVK
HDGEINKRVADLALEMLDVDVEGFDYMDRKLMLAIIDKFMGGPVGLDNLAAAIGEERETI
EDVLEPFLIQQGFIQRTPRGRIATQRAYQHFNIIQPENN
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgatagaagccgatcgtattattcatgctgagcctcaaggtgttgaggcgtatgaagag
cagatagacagagccatgcgtcctaaattactcgatgagtacacgggacaggatgcgact
cgagctcaacttaaggtgttcattcaggcggctcagaatcgtggtgaagcactggatcac
atgttgatctatggaccgccaggtttaggtaaaaccaccttggctctgatagtagccaat
gagatgggagtcaacatcaagtcgacctctggaccggttctcgaaaaagcgggagattta
gctgcgctgcttacaaacctagagccaggtgatgtgttatttatcgatgagatccacaga
ctcagtcccgtagtcgaagaaatcctttatccggcgatggaagattatcagctggatatc
atgataggtgagggacctgcagcgcgttcgattaaactcgatctgccaccatttaccttg
atcggtgccacaactcgggccggagcattaacctctcccttaagggcgagatttggtatt
cctctgagactcgagttctataatgttaaagatctcagcaccatagtgacccgctcagcc
aaagtactcgagcttcctattgacgatgaaggttcactggaagtggcaagacgctctcgt
ggtactcctcgtatcgctaatcgtttattgagacgggtgagagattatgctgaggttaaa
catgacggtgagatcaataagcgtgttgccgatctggctttagaaatgctcgatgtcgat
gttgaaggtttcgattatatggatagaaagcttatgctagctatcatagataaattcatg
ggtggtccggtcggactggataatttggctgcagccataggtgaagagcgggaaaccata
gaagatgtgctggaaccttttctgattcaacaaggttttatacagagaacgccccgcgga
cgcatagcgactcaacgtgcctatcagcactttaatattattcagccagagaataactaa
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