Shewanella violacea: SVI_2409
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Entry
SVI_2409 CDS
T01206
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
svo
Shewanella violacea
Pathway
svo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SVI_2409 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svo03400
]
SVI_2409 (recD)
Enzymes [BR:
svo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SVI_2409 (recD)
DNA repair and recombination proteins [BR:
svo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SVI_2409 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
AAA_11
Helicase_RecD
SH3_13
AAA_22
SLFN-g3_helicase
UvrD-helicase
nSTAND3
UvrD_C
Herpes_Helicase
AAA_16
AAA_28
PhoH
MeaB
CbiA
TrwB_AAD_bind
SRP54
NTPase_1
T2SSE
AAA_5
Flavi_DEAD
AAA_24
Motif
Other DBs
NCBI-ProteinID:
BAJ02380
UniProt:
D4ZL31
LinkDB
All DBs
Position
2765980..2768091
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AA seq
703 aa
AA seq
DB search
MIQSRLPIKNLLKSWETERLITPLDRHFALELAEFHRPQLNQHSESHNELFLLICALLSH
QLSQQHTCLPIEQILLNNPMNEQTAQCEITCSHAELMALLSQFSAIGVPLDSMPQNSLPR
DSVPQESVAQDNVPLDNVPQESVAQDGVAENSSTPLVLDQGSLYLQRYYQFETQVADKLR
HLAQGEIQELPTATQDTLNILFPHNPQKNAATESPVHDWQKIATATAFTKRLAVITGGPG
TGKTTTVTKLLFLMTQEAELIIKLVAPTGKAAARLSESIKASKVRLKSELAPFADSIDVN
SLSRVPEEASTLHRLLGVIPNSPQFRHHKDNPLRLDLLVVDEASMVDLPMMHKLLSALPD
HARLILLGDQDQLASVEAGAVLADICAGLKADKSQSAKWQMRYSAAYAQRLSQLTGNDLS
GFISASPGIGDSLCMLMHSHRFKGDAGIGQLATAVNNSDKSRIMEVWQSGYDELYWIEHQ
KTHTGNTGLELLLAQSVDHYRAYLELANQPQSTPLDIIECYNEFRILCAMRAGEYGVDGI
NQGVRDALKQAKLISPEHEFYPGRPVIIQSNDYNLGLFNGDIGLILPDSATQQATHSAPR
LMAHFIQADGSILKVLPARLPSHDTCFAMTVHKSQGSEFSKVAMVLPLWPSQAQKQLLTK
ELVYTAITRAKHHFTCLGSQTVFEQASLQATKRSSGLARRLWN
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgatccagtcaaggctaccgataaaaaacttgctcaaatcatgggaaaccgagcgactc
atcacaccactggaccgtcattttgcactcgagttggctgagtttcatcgaccacagctt
aaccaacacagtgagtcccacaatgagttatttctcctcatctgtgccttgctcagtcat
cagctttcccagcagcacacttgcttacccatagagcaaatcttgctgaataaccccatg
aacgagcagacagcccagtgtgaaatcacctgtagtcacgccgaacttatggccttattg
agtcagttcagtgctatcggtgtgcctctagatagcatgcctcaaaatagcttgcctcga
gatagtgtgcctcaagaaagcgtggcccaagataacgtgcctctagataacgtacctcaa
gaaagcgtggcccaagacggcgtagctgaaaacagttcgacgcctctggtattagatcaa
ggctccctctacctgcagcgctattatcaatttgagactcaggtggccgacaagctaaga
caccttgcccaaggtgagatccaagagcttccaacagccacccaagacaccttaaacata
ctgtttccccacaatccccaaaaaaatgcggccacagaatcaccagtgcatgattggcag
aagatagccacggccacggccttcaccaaacgcctagcggtaataaccggcgggccgggc
acaggtaaaaccaccacagtcaccaagctactgtttctaatgacccaggaagccgagctg
atcataaagctggtggccccaactggcaaagcggccgccagactcagtgagtcaatcaag
gcctctaaggtgcgattaaaatctgagcttgcccccttcgccgacagcatagatgtcaat
agcttaagccgggtccccgaggaagcatcgactctgcacaggttactgggcgtgatccct
aactcaccgcaatttcgccatcataaggataatcctctcaggctggatctgttagtggtc
gatgaagcctctatggtcgatctccccatgatgcacaagttactgtcggccttgccagac
catgccaggcttatcttgctgggcgatcaagaccagctggcctcagtcgaggctggcgcc
gtacttgcagacatctgcgccggactcaaggcagataagagccaatcggcaaagtggcag
atgcgttactcggctgcttatgcccaacgattatctcaactaacaggcaatgatttaagt
ggctttatcagcgcatccccaggcataggtgacagtttatgcatgttgatgcacagccat
agatttaagggtgatgcgggtataggtcagttagcgactgcggtaaataactctgacaag
tcacgcatcatggaggtgtggcaatcaggctacgatgagctttactggattgaacatcaa
aaaacacacacaggtaatactgggctagagctgttactggctcagtcggtggatcactac
cgggcttatctggagctggctaaccagccgcaaagtactcctctggatatcatagagtgt
tacaacgagttccgaattctgtgcgccatgcgcgcgggcgaatacggcgtcgatggcatc
aatcagggagtcagagacgccttgaagcaggccaaactaatctcgccagaacacgagttc
tacccgggacgcccggttatcatacagagcaatgattataacttaggcctgtttaacggt
gatatcggcctcatcttacccgatagcgccacacagcaggcgacccactcagcccctcgc
ttgatggctcactttatccaagctgatggcagtatcttaaaggtgctccccgctcgtctg
ccgagccacgacacctgttttgccatgacggtacataagagccaaggcagtgagtttagc
aaggtcgccatggtgctacctctctggcctagtcaggcgcagaaacagttactcaccaag
gagctggtgtatacggccatcacccgagccaagcatcactttacctgtttggggagtcaa
accgtcttcgagcaggccagcctacaggctaccaagcgatcatctggactggcgaggcga
ctatggaactag
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