Shewanella violacea: SVI_2471
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Entry
SVI_2471 CDS
T01206
Symbol
fadD-1
Name
(GenBank) long-chain-fatty-acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
svo
Shewanella violacea
Pathway
svo00061
Fatty acid biosynthesis
svo00071
Fatty acid degradation
svo01100
Metabolic pathways
svo01212
Fatty acid metabolism
svo02024
Quorum sensing
svo04146
Peroxisome
Module
svo_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
SVI_2471 (fadD-1)
00071 Fatty acid degradation
SVI_2471 (fadD-1)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
SVI_2471 (fadD-1)
09145 Cellular community - prokaryotes
02024 Quorum sensing
SVI_2471 (fadD-1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
svo01004
]
SVI_2471 (fadD-1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
svo04147
]
SVI_2471 (fadD-1)
Enzymes [BR:
svo01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
SVI_2471 (fadD-1)
Lipid biosynthesis proteins [BR:
svo01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
SVI_2471 (fadD-1)
Exosome [BR:
svo04147
]
Exosomal proteins
Exosomal proteins of breast milk
SVI_2471 (fadD-1)
Exosomal proteins of breast cancer cells
SVI_2471 (fadD-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
BAJ02442
UniProt:
D4ZL93
LinkDB
All DBs
Position
complement(2832602..2834275)
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AA seq
557 aa
AA seq
DB search
MEQIWIDNLPDDVPSEIDVEEYGSLVDMFETSVSKFADQPAFVNMGATLTYRKLEERSRA
FAAYLQNELKLEKGDRVAIMMPNLLQYPIVLFGVLRAGMVVVNVNPLYTPRELKHQLNDS
GAKAVVVVSNFAHTLEKVVEQTQVESVILTGLGDLLSAPKRTLVNFVVKYIKKMVPKYDL
PHAISMRKTLSKGRRLQYVKPKLSRDDLAFLQYTGGTTGVSKGAMLSHGNVVSNLLQANA
AYSPMLNEGKEFVVTALPLYHIFALTVNCLLFMHKGANNLLITNPRDLPAFIGELKKHPY
TAITGVNTLFNALVNSEEFKQLDFSNLKLSIGGGMAVQRAVAEKWQNITKTKLLEGYGLT
EASPLVTCCPYNLAGYNGAIGFPVAMTDIQVRDDDGKVLAQGETGELFAKGPQIMLGYWQ
RPEETASVIDEQGYLATGDIGYMDEQGYFYIVDRKKDMILVSGFNVFPNEVEEVVAMHPS
VIEVAAVGVPNANSGEKVKVFVVLSDKSLSERDIIDHCRLHLTGYKVPKLVEFRDELPKS
NVGKILRRELRDEVKSA
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
gtggaacagatttggattgataatttaccggatgatgtaccctctgagatagatgttgag
gagtatggatcccttgtcgatatgtttgagacctcagtatcgaaatttgccgaccagcct
gctttcgtcaacatgggcgcaacgttaacctatcgtaagttagaagagcgcagtcgtgct
ttcgccgcttatcttcagaacgagcttaagctggagaagggcgatagggttgccatcatg
atgccgaatctattgcaataccctatagtcctgtttggtgtgttacgtgccggcatggtg
gtggtcaatgttaatcccctctatacgccaagagaattgaagcatcagcttaacgattct
ggggctaaggccgtagtcgttgtctctaacttcgctcataccttagaaaaagttgttgag
cagacccaggtcgagagtgttattttaaccggactcggtgatcttctcagtgcgcctaaa
cgcaccctagtcaattttgttgtcaaatatatcaagaagatggtgccaaaatacgatctt
cctcatgctatttccatgagaaaaaccttgagcaaggggcgtcgtttacaatatgtgaag
cctaaattgtctagagatgatctggctttcctgcaatacacaggtggtacaacaggggtt
tctaagggcgccatgttgagccatggtaacgtagtcagtaacttgcttcaggccaatgcg
gcgtattcacctatgctcaatgaaggcaaagagtttgtcgtcactgcgctgccgctttat
catatttttgccttaacggtgaactgtctgttgtttatgcataaaggtgcgaataaccta
ctcatcaccaatcccagagatctacccgcttttataggtgagctgaagaagcatccctat
accgcaatcacaggggtaaacaccctgtttaatgccctggttaattcggaagagtttaaa
caactggatttttcaaaccttaagttatctatcggtggtggtatggccgtgcagcgcgca
gtcgctgagaaatggcagaatatcactaagacaaaattattagagggttacggcttaacc
gaagcttcgcctctcgtaacatgttgtccctataacttggcaggttataacggtgccata
ggtttccccgtcgctatgacagacattcaggtccgtgatgatgacggcaaggtcttagcc
cagggagagacgggagagctgtttgctaaggggccgcaaatcatgttgggctattggcag
cgcccagaggaaaccgcctcagtcatagatgaacagggttatctggctacaggtgatatc
ggctatatggatgagcaaggctatttctatattgtcgatcgtaagaaagacatgattttg
gtgtctggctttaatgtatttcccaacgaagtcgaagaagttgtcgccatgcatcctagt
gtgattgaagtggctgctgtgggtgtaccaaatgccaattcgggtgagaaggtgaaggtg
tttgtggtcctaagtgataaatctttaagcgaacgagatatcatcgaccattgccgactg
catttaacgggatataaagtacctaagctggtagaattcagagatgagctaccgaaaagc
aacgtaggtaagatcttacgtagagagctaagagatgaggtcaagtcagcttaa
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