Shewanella violacea: SVI_2555
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Entry
SVI_2555 CDS
T01206
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
svo
Shewanella violacea
Pathway
svo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SVI_2555 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svo03019
]
SVI_2555 (rne)
03009 Ribosome biogenesis [BR:
svo03009
]
SVI_2555 (rne)
Enzymes [BR:
svo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SVI_2555 (rne)
Messenger RNA biogenesis [BR:
svo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SVI_2555 (rne)
Ribosome biogenesis [BR:
svo03009
]
Prokaryotic type
rRNA processing factors
SVI_2555 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4867
Motif
Other DBs
NCBI-ProteinID:
BAJ02526
UniProt:
D4ZLH7
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All DBs
Position
2913593..2917012
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AA seq
1139 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GADRHGFLPLKEIAREYFPKGYTFQGRPNIKEVIKEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKAALSELAVPNGMGLIVRTAGVGKDSAEL
AWDLKVLEHHWTAIKEASVGRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEEA
KQHVALVRPDFADRIKHYDAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGSDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMRDAVHLDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLAL
SILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPNMTTP
DYRVSRHRKDDQISEASYKLLEQPVSNLYEPRKLERATSPEPALKGFTAPVKAPEPKAKA
AIAPKATEEPGLIAKFFAAIGGLFKAEPKAEEPKKQSESPSQNRNNRRPARKNDSRRNDS
RRNRDDKEQSGDKNERTSRPSRNKRADSNEERSGKEQSDQGKRQSRHDNKPTTRTRPQVQ
VQVQVDVTESTDTTDATPKQEVARERRQRRNMRRKVRIDSEKSLKLDEQSTEVVAAEVIV
ETAPTSVKEDKQARPKRQPRKAKPKTDIKANDDVQVEQSSENVIVEVETKAQDTQQNLDL
VSQDSLPVETSAAEASSDETKADATDDKPREGQRRSRRSPRHLRAAGQRRRREEDDGETS
ADADATPAFIPNETEVEFQANQVAASVITEAKVEAKTQSATAAPAKPAAPVIASVPAEKK
VEASTEAQSASAAPTKPAAPVQAETQVKVEAKAQSASAAPAKPAAPVQVEAKAEAQSASA
APTKPAAPVQTEAPMKVEVKAEAQSASAAPTKPAAPVQTAAPVKVEAKAEAQSASAAPAK
TADPVKAEAPVQAKAEVKTATAAAVRPATQVKVATQVTAEVKTEPAVQAKVATPVKTAVK
AKSTSRFGTMVSSDMIAPVVETRENVQTPKGRQYEASESSLADAKPKTANSANSDMVRP
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgttaattaatgcgactcaatctgaagagttgcgcgtagccctagtagat
gggcaacaactatatgatctagatatcgaaagtccaggtcacgagcaaaagaaagccaat
atatacaagggtaaaattacccgtgtagaaccttctctagaagcggcatttgtcgattat
ggagcagaccgtcatggattcctgccccttaaagagattgccagagaatacttccctaaa
ggttacactttccaaggtcgccctaatattaaagaggtgattaaagaaggccaagaagtc
atagtacaaattgataaagaggaacgtggcaataaaggcgccgcgttaactacttttatc
agtttagcgggttcatatctggtattaatgccaaacaatcctcgtgccggcggtatctct
cgtcgtatcgaaggtgatgagcgtactgagctaaaggctgccttatccgagctagctgtc
cctaatggcatgggtttaattgttcgtactgctggtgttggcaaagactcagcggaactt
gcatgggatctaaaagtactggaacatcattggaccgcaattaaagaagcgtctgttggt
cgtcccgcccctttccttattcaccaagaaagtaacgtcatcgttcgtgcaattcgcgac
tatttacgccgtgatgtgggtgaagttcttatcgatcatccgcgcatcttcgaagaagct
aaacaacatgtagctttggttcgcccggatttcgctgacagaatcaaacattacgatgct
gaagtacctctgtttactcatttccaaattgagacacagatcgaatctgcattccaacgt
gaagtgcgtctaccctctggcggttcgatcgttatcgaccccactgaagcattgacttca
atcgatatcaactcggctcgcgccactaagggtagtgatattgaagagactgcgttaaac
accaacctagaagctgcagatgaaattgcccgtcaattacgtcttcgtgacttgggtgga
ctcgtggttattgacttcatcgacatgacacccgtacgtcatcagcgtgaagttgaaaat
agaatgcgtgatgcggttcacttagatagagcccgtgttcagttaggacgtatctctcgc
tttggtttgatggagatgtcacgtcagcgccttagaccttctctggaagagtcagctgca
catctatgtccacgttgtcacggtcaaggcaccattcgtggcactgagtcattagcactg
tctattcttcgtctgatggaagaggaagcgattaaagagaatacctctcaaatcgaagcc
atagtgccagtcgatgtggccgctttcctactcaacgagaaacgaaaagccattcgcatc
acagagcaacgccatgatgttgaagtctatgtgatcccagatccaaatatgaccacaccg
gattaccgagtctcacgtcatcgcaaagacgatcagataagcgaagctagctataaactg
cttgaacagcctgtgtctaatttgtatgagcctcgtaagcttgaacgtgcaacgtctcca
gagcccgcactaaaaggcttcaccgcaccagtaaaagcaccagaacctaaagctaaggct
gcaatagcacctaaggcaactgaagagccaggcttaatcgccaagttcttcgcggcaatt
ggcggactattcaaggctgaacctaaggctgaagagcctaagaagcagagcgaatcaccg
agtcagaaccgtaataaccgtcgtcctgctcgcaagaatgattcacgccgtaacgacagt
cgccgtaatcgtgatgataaagaacaatcaggcgataaaaatgagcgtacttcacgtcca
agccgtaataagcgtgctgattcaaatgaagaacgctcaggcaaagagcaaagcgatcaa
ggcaagcgtcaatctcgtcatgacaacaagccgactactcgtactcgtccacaagtacag
gtacaagtacaagtagacgttactgaatctacggatactactgatgcgactcctaagcag
gaagttgccagagagcgtcgtcaacgtagaaatatgcgcagaaaagtgcgtatagacagt
gagaagtcactgaagcttgatgagcaaagcactgaagtagttgcagctgaagtgattgta
gaaacggctccaacttcggttaaagaagacaagcaagctcgtcctaagcgtcagcctcgt
aaagctaagcctaagactgatattaaggctaatgatgacgttcaagttgagcaatcaagt
gaaaacgtaattgtcgaagtagagaccaaagcacaagacactcaacaaaaccttgatctt
gtttctcaagatagcttgcctgttgaaacaagtgctgctgaagctagctcagatgaaact
aaagctgatgctacagatgataagcctagagaaggtcagcgtcgtagtcgtcgtagccca
cgccatcttcgcgctgcgggtcaacgtcgtcgtcgtgaagaagatgacggtgagacgagt
gctgatgcagatgcaactccagccttcattcctaatgagactgaagttgaattccaagcg
aatcaagttgcagcaagtgtaattactgaggcaaaagtcgaagctaaaactcaatcggca
acggctgcaccagctaagcctgcggctcctgttattgcttcagtacctgctgaaaagaaa
gtcgaagctagcactgaagctcaatcagcatcagcggcaccgactaagcctgcagctcct
gttcaagcagagactcaggttaaagttgaagctaaggctcaatcagcctcagctgcaccg
gctaagcctgcggctccagtacaagtcgaagcaaaagctgaagctcaatcggcatcagct
gcaccgactaaacctgcggcgcctgtgcaaacagaagctccaatgaaagtcgaagtaaaa
gctgaagctcaatcggcatcagctgcaccgactaaacctgcggcgcctgtacaaacagca
gctccagtgaaagtcgaagcaaaagctgaagctcaatcggcatcagctgcaccagctaag
actgcggatccagtgaaagctgaagctcctgtacaagctaaggctgaagttaaaaccgca
accgcagcagctgtcagaccagcgactcaggttaaagtagcaactcaggtcaccgccgaa
gtcaaaacagaaccagcagtgcaagctaaagtagcaacgccagtcaagactgccgttaaa
gctaaaagtactagtcgctttggtactatggtaagttcagacatgatcgcaccagtggta
gaaacgagagaaaacgtacagacacctaaagggcgtcaatacgaagcatccgaatcttca
ctagccgatgctaaaccgaaaacagcaaattcagctaattcggatatggttcgtccataa
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