Shewanella violacea: SVI_2760
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Entry
SVI_2760 CDS
T01206
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
svo
Shewanella violacea
Pathway
svo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SVI_2760 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svo03400
]
SVI_2760 (mfd)
Enzymes [BR:
svo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SVI_2760 (mfd)
DNA repair and recombination proteins [BR:
svo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SVI_2760 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
Glyco_tran_WecG
DNA_methylase
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAJ02731
UniProt:
D4ZM32
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All DBs
Position
3129080..3132553
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AA seq
1157 aa
AA seq
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MKSFSILTPPAVKSASKAQTLYTLGGVSQAITLASLVQNHAGITVAVTHDTPTALLLESE
LDYLLKDSDFPVWLFPDRETLPYDSFSPHQDLVSQRLETLSRLPHAKQGLVIVPLSTLMV
RLPPKSFLAGNVLMLKKGDNYCLQDVKQQLINTGYHLVEQVYEHGEFAVRGSIIDLFPMG
SEQPFRIELFDDEVESIRHFDPESQRSSGEIDSIRLLPAKEFPTDDQAIEGFRQRYRRRF
ERLVKEPESVYQMVSRKIFPAGIESYLPLFFDETASLFDYLPENAQLVNIGDLEAASKAH
LAEVELRYEDRRVDPLRPLLAPKELYLLTDQIFSHFKALPRSLLKVGNDPDKGHQAKLEK
LPELTANHKLKQPLLQLQEYATKETSILFSAESEGRREALLELLSKINIKPKRFDSLEEF
TSSKAKLGLIVSPLSNGCIIEKSRGGKFSLICETELFGHRISQKRRRDKQKQISSDALVK
NLAELKVGQPIVHLDHGVAKYQGLETLDTGGLIAEYLKLEYAGGDKLYVPVSALHLISRY
SVGPDEEANLNKLGNETWAKAKKKAVEKIRDVAAELLDVYARRQSRPGSACKIDEQEYAQ
FANSFPFEETVDQETSINAVLTDMCSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQV
AILVPTTLLAQQHFENFKDRFADWPVKIEVISRFKTAKEQKLIMDELSKGKVDIIIGTHK
LLHSEGDFENLGLLVIDEEHRFGVRQKEQIKALRAHVDILTLTATPIPRTLNMAMSGMRD
LSIIATPPAKRLAVKTFIREYDTTTIREALLREILRGGQVYFLHNKVETIEKRAKEISEL
LPEARVVTAHGQMRERDLERVMSDFYHQKFNVLVCTTIIETGIDVPSANTIVIERADNFG
LAQLHQLRGRVGRSHHQAYAYMMTPHPKSITSDARKRLEAIGALEDLGAGFMLATQDLEI
RGAGELLGDEQSGHISKIGFTLYMEMLEDAVKSLKEGKEPSLSQMLRRQCEIELRIPALL
PDDFVHDVNIRLSLYKRIANCDSENALDELKVELIDRFGMLPDATKNLMELTLYKHQATS
LGIKKLEVHAKGGSLEFNDDHCVDPGFIIGLLQSQPQNYRMDGPSKLKFLIPAESHKDRL
ALVNLLLGQLSQHRLGE
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgaaatctttctctatattgactccaccggcagtcaaaagtgcatcaaaagcgcaaaca
ctatacacattaggtggtgtctctcaagccatcaccttagcgagcctggttcaaaaccat
gctggtatcacagttgcagtgactcacgacacacccacagccctgttactggaatctgaa
ctggattatctactgaaagatagcgattttcctgtatggcttttcccggatagagagacc
ttaccctatgacagtttctctccccaccaagatctggtatcccaaagattagaaacctta
tctcggctgcctcatgccaagcagggattagtgattgttcccttgagcaccttgatggtg
cgtttaccgcctaagtcattcttagccggcaatgtgctgatgctgaaaaaaggcgacaat
tattgtcttcaggatgtcaaacaacaactgataaacactggctatcacttggtcgagcaa
gtctatgaacatggtgagttcgccgtcagaggctcgataattgatctattccccatgggc
tcggagcagcccttccgtatcgagttatttgatgatgaagtcgagtccatcagacacttc
gatccggagagccagagatccagcggcgaaattgattccatacgtttactgccggcgaaa
gagttccccaccgatgaccaggcaatcgaaggctttagacagagataccgtcgacgcttc
gagcgcttagttaaagagccagaatctgtctatcagatggtcagtcgaaaaatatttcct
gcagggatcgaaagctatctgccactcttttttgacgagacggccagcctgttcgattat
ctgccagaaaatgctcagctggttaatattggcgatctagaggccgcatctaaggcacat
ttagccgaagttgaactgagatatgaagatagacgggtcgatcctttacgcccgctactg
gcccctaaagagctctacctactcacagatcagattttctctcattttaaggccctacca
agaagtctgcttaaggtcggcaatgaccccgacaagggtcatcaggctaagctagaaaag
ctgccagaattaactgccaaccacaaactcaagcagcccctgctccagcttcaggaatat
gcgaccaaagagaccagcatactcttcagcgccgaatctgagggacgtcgagaagcctta
ctcgaactgctcagcaagataaacatcaagccgaagcgattcgacagcttagaggaattt
acctcctcgaaggctaagcttggactcatagtctcccctctctctaacggctgtatcata
gagaagagccggggtgggaagtttagccttatttgtgaaaccgagcttttcggtcatcga
atctcccagaaacgtcgtcgggacaaacagaaacagataagtagcgatgccttagtcaaa
aacttagctgagctgaaagtcggccaacccatagtccacttagatcatggagtcgcaaaa
tatcaaggactagaaacgttagatactgggggtcttatcgccgagtacctaaagttagag
tatgccggcggtgacaagctttatgtacctgtgtctgcacttcacctcatcagccgttat
agtgtggggccagatgaagaagcaaacttaaacaaactcggcaatgaaacatgggccaag
gctaagaagaaagcggtagagaagatccgtgatgtagccgccgaactgctcgatgtctat
gcacgcaggcaatcaaggcctggttcggcctgtaagatcgatgagcaagaatatgctcag
tttgccaatagtttccccttcgaagaaacggtggatcaagagacttcaatcaatgctgtt
ttgaccgatatgtgttcgcccatcgccatggatagacttgtgtgtggtgatgtaggtttt
ggtaagactgaggtggcaatgagagccgccttcgtcgcagtcaacgatggtaagcaagtc
gccatcttagtgccgaccaccttgctggcacagcaacacttcgagaacttcaaagacaga
tttgccgattggccggttaaaattgaggtgatttctcgcttcaagacggctaaagaacag
aagctgatcatggatgagctaagtaaaggtaaagtcgatatcatcataggcacccataag
ttactgcattccgagggtgattttgaaaacctaggcttattggtcatagatgaagagcat
agatttggtgttaggcagaaagaacaaattaaggctctgcgggctcacgtagatatcctg
acgttaaccgcgacgcctatacccagaaccttaaatatggctatgtcgggcatgcgagat
ctatcgattattgctaccccaccggcgaagagactcgcggtaaagacctttatcagagaa
tacgacaccaccaccatacgagaagccttactgcgtgaaattctccgtggcggacaagtt
tactttctccacaataaagtggagaccatagagaaacgcgccaaggaaatcagtgagctg
ctaccagaggctagagtcgtcacggctcacggtcagatgcgggaacgcgatttggaaaga
gtcatgtctgacttttatcatcaaaagttcaatgttctcgtctgtactaccattatcgag
acaggtatcgatgtgccctcggctaacaccatagtcatagagagagccgataactttggc
ttagctcaactacatcagcttagaggacgagtcggtcgctcccatcaccaggcttatgcc
tatatgatgacgccgcatcctaaaagtattacctcagatgcacgcaaacggttagaagcc
atcggcgccttagaagacttaggtgctggctttatgctagcaacccaagatcttgaaatc
cgcggcgctggcgaactgttaggcgatgaacaatcgggccatatatccaaaataggtttc
accctgtatatggagatgctggaagatgcggttaagtcgcttaaagagggtaaagagccc
tctctgagtcagatgcttagacgtcaatgtgagatagaactgcgaattccggccctgctt
cccgatgatttcgtccatgacgtcaatattcgcttgtcactgtataaacggattgccaac
tgtgattcagaaaatgccctcgatgagcttaaagtcgaactcattgaccgctttggtatg
ctacccgatgccactaagaatctgatggagctaaccctgtacaaacatcaggctactagc
ctaggcattaagaaacttgaggtgcacgctaagggcggcagcctggaatttaacgacgat
cattgcgtcgatccgggatttattatcggtttacttcaaagtcagccacaaaactatcga
atggatggcccgagtaagttaaaattcctaattccagccgagtcacataaagacagactg
gcactggttaacttgctattagggcaattatcacaacatcgtcttggagaataa
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integrated database retrieval system
