Shewanella violacea: SVI_2905
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Entry
SVI_2905 CDS
T01206
Symbol
fadB-2
Name
(GenBank) fatty oxidation complex, alpha subunit
KO
K01782
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
]
Organism
svo
Shewanella violacea
Pathway
svo00071
Fatty acid degradation
svo00280
Valine, leucine and isoleucine degradation
svo00310
Lysine degradation
svo00362
Benzoate degradation
svo00380
Tryptophan metabolism
svo00410
beta-Alanine metabolism
svo00640
Propanoate metabolism
svo00650
Butanoate metabolism
svo00907
Pinene, camphor and geraniol degradation
svo00930
Caprolactam degradation
svo01100
Metabolic pathways
svo01110
Biosynthesis of secondary metabolites
svo01120
Microbial metabolism in diverse environments
svo01200
Carbon metabolism
svo01212
Fatty acid metabolism
Module
svo_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
SVI_2905 (fadB-2)
00650 Butanoate metabolism
SVI_2905 (fadB-2)
09103 Lipid metabolism
00071 Fatty acid degradation
SVI_2905 (fadB-2)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
SVI_2905 (fadB-2)
00310 Lysine degradation
SVI_2905 (fadB-2)
00380 Tryptophan metabolism
SVI_2905 (fadB-2)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
SVI_2905 (fadB-2)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
SVI_2905 (fadB-2)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
SVI_2905 (fadB-2)
00930 Caprolactam degradation
SVI_2905 (fadB-2)
Enzymes [BR:
svo01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
SVI_2905 (fadB-2)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
SVI_2905 (fadB-2)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
SVI_2905 (fadB-2)
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GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
Motif
Other DBs
NCBI-ProteinID:
BAJ02876
UniProt:
D4ZMH7
LinkDB
All DBs
Position
complement(3290328..3292454)
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AA seq
708 aa
AA seq
DB search
MEKTFNLVRREDGIAVLTIDVPGETMNTLRTEFAAEITEVLAEIKADTSIKGLVLASGKK
DCFVAGADISMLDACTSVEDAKALSQQGHIVFNELEALSIPVVAAIDGVCLGGGLELALA
CHLRVCSQNGKTMMGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKM
GLVDDVVPESILLATAVKMALKGKVAPKKENKSLVNKLLEGTAVGRNIIFDQAGKQVQKK
TQGNYPAPAKIIDCVRQGMAKGKTKGLEVEASHFAELVMSKESAALRSIFFATTEMKKET
GAGDVKPRKVNKAMILGGGLMGGGIASVTTSKAKIPARVKDISEQGLSNALSYAYKLLDK
GVKRRHMTPSARDNIMSLMTTTTEYIGIKYADIVVEAVFEDLSLKHQMVKDVERECGENT
IFASNTSSLPISQIAEAAARPENVIGLHYFSPVEKMPLVEVIAHKKTSPETIATTVAFAR
KQGKTPIVVQDGAGFYVNRILALYMNEAAQLLLEGQSVEHLDKALVKFGFPVGPMTLLDE
VGIDVGAKISPILEAELGERFKAPAAFDKLLSDGRKGRKNGKGFYLYAGKAKKKAKQVDE
SVYQVLGLKPGVNAEVSEVAQRCVVQMLNEAVRCLEEGIIASPRDGDIGAIFGIGFPPFL
GGPFHYIDTLGAGVLVAKLEKYQAKHGDRFTPCNKLIEMAESNQRFFD
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagacatttaatttagttcgtcgtgaagatggcatcgctgtactgacgatagat
gtacccggtgaaaccatgaatactctgcgcaccgagtttgctgccgagatcactgaggtt
ttggctgaaattaaagccgataccagtatcaagggactagttttagcttcaggtaagaaa
gattgtttcgttgccggtgcagatatttccatgttagatgcatgtacctcggtagaagat
gccaaggcactgtcacagcaagggcatattgtatttaacgaactcgaagccttatctatc
ccagttgtggcggcgatagatggcgtgtgtctgggcggcggtctggagctggcattggct
tgtcatctaagagtatgtagccaaaacggtaagaccatgatgggcgtgcctgaggttcag
ctaggcctgctacctggcggcggtggaacccaaaggttacctagactcgtgggtatcact
acggcgttagatatgatgctcacgggcaagcagatccgtcctaagcaagcgttgaagatg
ggcttggtcgacgatgttgtccccgagtcgatactgttagctaccgcagttaaaatggcg
ctgaaaggtaaagtagcgcctaagaaggagaataagtctctggttaacaagttactagaa
ggcacagctgttggccgcaatatcatcttcgatcaggcgggtaagcaagttcagaagaag
actcaaggtaattaccctgcacctgccaagattattgactgtgtgcgtcaaggcatggcg
aaggggaaaaccaagggactggaagtggaagccagccatttcgccgagctggttatgtcg
aaagagtcggccgcattaagaagcatcttctttgccacgaccgagatgaagaaagagacc
ggcgccggtgatgttaagcctcgcaaggttaacaaggctatgatactcggtggcggcctt
atgggcggcggtattgcctctgtgacgaccagtaaggctaagatcccggcgcgagtgaaa
gatatcagtgagcaggggcttagcaacgcactttcttatgcttataaactgctggataaa
ggtgtaaagcgtcgtcatatgacgccatcggccagagacaatatcatgtcgctgatgacc
acaaccactgagtatatcggcattaaatatgccgatatcgtggtagaggccgtttttgaa
gacttgagccttaagcatcagatggtaaaagatgtcgaacgcgagtgtggcgagaacacc
atttttgcatcaaatacctcttcactgcctatctcgcagattgctgaggctgctgctcgt
cctgaaaatgttatcggtctgcattacttttctccggttgagaagatgcccttggttgaa
gttatcgctcataagaaaacgtcgccagagaccatagcgactacggtagcctttgctcgc
aagcaaggtaaaacgcctattgttgtacaagatggtgctggcttttatgtgaatcgaatt
ttagcgctttacatgaatgaagctgcacaattgctgcttgaaggtcagagtgttgagcat
cttgacaaggcactggttaagtttggcttcccagttggtcctatgacactactcgatgaa
gttggaatcgatgtcggcgctaagatatcccctatattggaagctgagttaggcgagcga
tttaaggcgcctgctgcgtttgataagttgctgagcgatggcagaaagggtcgtaagaac
ggtaaaggcttctatctgtacgctggcaaggccaagaagaaagctaagcaagtcgacgag
agtgtctaccaagttctcggcttgaaacctggcgtgaacgcagaagtgtctgaagtcgcc
cagcgttgtgtggtgcagatgctcaatgaagctgtgcgttgtttggaagaggggattatc
gcctcaccacgtgatggtgatataggtgctatcttcggcattggtttcccgccattccta
ggtggaccattccattatattgatacgttaggagccggggttttagttgcaaaactagaa
aaataccaagccaagcacggtgacagatttacaccttgtaataagttgatagagatggct
gagagcaatcagcgtttcttcgactaa
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