Shewanella violacea: SVI_2944
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Entry
SVI_2944 CDS
T01206
Name
(GenBank) exonuclease SbcC, putative
KO
K03546
DNA repair protein SbcC/Rad50
Organism
svo
Shewanella violacea
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svo03400
]
SVI_2944
DNA repair and recombination proteins [BR:
svo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SVI_2944
Archaeal homologous recombinant proteins
SVI_2944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
nSTAND3
AAA_21
GTP_EFTU
cobW
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
BAJ02915
UniProt:
D4ZML6
LinkDB
All DBs
Position
complement(3335228..3338284)
Genome browser
AA seq
1018 aa
AA seq
DB search
MRPLKLIMSAFGPFASTQETDFAALGTNPLFLINGPTGAGKTTLLDAICFALYGKTTGDE
REGSQMRCDLALDSLLTEVTFSFALGEIQYRIRRVPEQPRIKKSGDGYTVQKPEAQLYRI
DSDGSEHLLVASKVSEATAEIEQLTGLDADQFRQVMVLPQGKFRELLMADSKDREKIFSQ
LFQTQIYRKIEDKLKFQASAIKAEVRDHRNRRDGILHNIQLESDEALNAELAEFSPKLTQ
AVESKEKASLVFIDANKQFESAKLLTNDFDALDKLKLAGALLDEQKQAFEQSQFRLESAQ
KAQQLKPVVDVLVARESELSQAQDVVTQAKSAKHQSELALTICKTQFDGLSELEQKLQHV
QNDELQLTSLAPQLQGLESLQQALSTARLELNQAKDKGTKAKSALDGLTLDKQAAEQQVP
QLEALAAEQVNAQQALTAQGDLIERYQQWQQASAEAGKTEQSLIQAQEKGQRLRLSFSQT
QTENRQCQLVWHRGQAASLAQQLKTGEPCSVCGSEQHPNPATSEQVLPTEDELQQAQRNE
ELANEALNQARAEYSGLKTKHQEQLRQVSDYQHKLGDWSSQSLESLQSHNQQLQQQVNQA
NAAAQQLIQLRQQVQTWQVKEQDLRAVLETERERYQGVQTRVASFQGKLEQALAAIPDEY
RSLDTLNAAINRAQSKVRVFKKQIQDIRQSHTQAVEQDAAHGAALIAVESSLVQARDHSD
KANVELDAQLVTSGFSDKQALVQALLSSDESQKIADDITQYQQDCVANQTRLAQLREKLA
EQVKPDLTDIEADLSTKQTEQQQAEHSWQLIQSRVTQLTQTQKQLKDADSQAKKLEDEYA
IIGTLSEVANGQTGNKISLQRFVLSVLLDDVLLEASHRLQTMSKGRYRLIRKEERAKGNK
ASGLELEVEDAYTSKVRPVATLSGGESFMAALSMALGLSEVVQAYAGGIKLDTLFIDEGF
GSLDQDSLDLAIRTLMDLQSSGRMIGVISHVSEMKEQIGTRIDIIKTALGSETVIVLP
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgaggccattaaaactgataatgtcggcctttggccccttcgcatcaactcaggaaaca
gacttcgcggcgctgggcactaatccgctgtttttaatcaatgggccgactggcgcgggt
aaaaccacacttttagatgccatctgtttcgccttatacggtaagaccactggtgatgag
cgtgaaggcagccagatgcgctgtgacttagcccttgacagtctactcacagaggtgacc
tttagttttgccctgggtgagattcaataccgcatccgccgtgtgcctgagcagccacgc
atcaagaaaagtggtgatggttacacggtgcagaaacctgaggctcagctgtatcgtatc
gatagcgacggtagcgagcatctgctggtggcgagtaaggtctcagaggctactgctgaa
attgagcaactcacaggcttagatgccgaccaatttcgtcaggtgatggtgctgccccag
ggcaagttccgtgaactcctgatggcggactctaaagacagagagaagatattcagccag
ctgtttcagacccaaatttatcgaaaaattgaggataagctcaagtttcaggcatcggca
attaaagccgaggttcgggatcaccgcaacagacgtgatgggatcttacacaatatccag
cttgagtctgatgaagcgttaaatgctgagcttgccgagttttcacctaaattaactcaa
gcagttgagagtaaagaaaaggcaagtcttgtctttattgatgccaataagcagtttgaa
tctgccaaattactgaccaatgattttgacgctttggataagctgaagctggccggcgca
ttattagatgagcaaaaacaagcttttgagcagagtcaattcaggctcgaaagtgcgcaa
aaagcccagcagctcaaacctgttgtcgatgtattggtggcaagagagtctgaactcagt
caggcacaagatgtcgtcactcaggctaagtcggcaaagcaccagagtgagctagcgcta
actatctgcaaaacccagttcgacggtttaagtgagttagagcagaagttacagcatgtc
cagaatgatgagctgcagttaaccagcttagctccacagcttcaggggctagagagtctg
caacaagcgctgagcacagctaggcttgaactcaatcaggctaaggataaaggcactaag
gctaaatctgcgctagatggattaaccttagataaacaagccgccgagcagcaagttccc
cagttagaagcattggccgcagagcaggttaatgcccagcaagcacttacagcccaaggt
gacttgattgagcgttatcagcagtggcaacaggcaagcgcggaagcgggaaagacagag
cagagcctgatacaagcacaagagaagggtcaaagattacgtctaagttttagccagacg
caaactgaaaatcgacaatgtcagcttgtttggcatcgaggtcaggcagcgagtttggcc
cagcagcttaaaacgggtgagccatgttccgtgtgcggaagtgagcagcatccaaatcct
gccacaagtgagcaagttctgccgacagaagatgagttgcaacaagcgcagcgtaatgaa
gaactggccaatgaggcattaaaccaagcaagagccgagtattcaggtttaaagactaag
caccaggagcagttacgacaagtcagtgattatcaacataagctaggtgactggtcatcg
cagtcactggagtcgcttcagtcccataatcagcagctacagcagcaggtgaatcaggca
aatgcagccgcacagcaactgattcagcttagacagcaagtgcaaacttggcaggtcaaa
gagcaagatcttagagctgtgctcgagactgagcgggaacgataccaaggtgtgcaaaca
cgggtagcttcttttcaaggtaaattggagcaggcgttagcggcaatacccgatgaatac
cgcagtttggacactctcaatgccgcgattaaccgagcgcaatctaaggttagagtcttt
aagaaacagattcaggatatacgtcagtctcatactcaagcggtggagcaagatgcggcc
catggcgcggccttgatagctgtcgaatccagcttagttcaggcaagggatcacagtgat
aaggctaacgtcgagcttgatgctcaattagtcacatctggattcagtgataagcaagcg
ttagtccaagccttattatccagtgatgagtcacagaaaatagccgatgacatcactcag
tatcaacaagattgtgttgcgaatcagactaggttagctcagttgagagagaagttagcc
gagcaagttaaacctgatttgacagacattgaggcggatttatccactaagcaaacagag
caacagcaagctgagcatagttggcaactcattcagagcagagtcacacaattgactcag
actcaaaaacagctaaaggacgccgattctcaggccaagaaacttgaggatgagtacgcc
attattggcaccttatctgaagtggccaatggacagacaggcaacaagatcagcttacag
cgttttgtcttgagtgtgttgctcgacgatgtgctgcttgaggcgagtcatagactacag
actatgagtaaggggcgttaccgtctgatacgtaaagaggagagggctaagggtaataag
gcttctgggcttgagctagaggtggaagatgcttatacctctaaggtacgccctgtggct
accttgagtggaggtgagagctttatggctgcgctttccatggctttggggctgtcagaa
gtcgtgcaggcctatgccggtgggattaagctagatacgctatttattgatgagggattt
ggcagcctagatcaagactcgctggatttagctatccgcaccttgatggatctgcaatct
tccggtcgtatgataggggttatctcccacgtctccgagatgaaggaacagatcggcact
cgtatcgacattattaaaacagcccttggcagtgaaactgtcatagtgttgccgtag
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