Shewanella violacea: SVI_2945
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Entry
SVI_2945 CDS
T01206
Name
(GenBank) exonuclease SbcD, putative
KO
K03547
DNA repair protein SbcD/Mre11
Organism
svo
Shewanella violacea
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svo03400
]
SVI_2945
DNA repair and recombination proteins [BR:
svo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SVI_2945
Archaeal homologous recombinant proteins
SVI_2945
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
Motif
Other DBs
NCBI-ProteinID:
BAJ02916
UniProt:
D4ZML7
LinkDB
All DBs
Position
complement(3338281..3339426)
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AA seq
381 aa
AA seq
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MKFIHTSDWHIGRQLHNQNLLEDQRFVLNQIVTFAVENSVDAVIIAGDIYDRSVPPANAV
ALLDEVVNRLVNELNIPIIMIAGNHDGHERLGFASRQMIESGLHIIGPLSKDISTITLSG
KNGDAVFYGLPYADPATVRHVLDCEVTSHEAAMVKLLEQVHGHDSQGLPKVVISHCFLDG
GSESESERPLSIGGADKISPSLFTPFNYTALGHLHGPQYKGAEHVRYSGSMLKYSFSEQH
QNKSVTLVELDAQGVANIKLLPLKAYRDVRIIEGELAELLEQGKTDVNREDYLMVRLSDK
TAILDAMGKLRSVYPNVLHLERTGLMADNGRVALSRDHIKKGELDMFSDFFSQVSGEPMT
KAQQQAMTVAIDELHKVESRS
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttatccacacttctgactggcatatcggcaggcaactgcataaccagaatctg
ctcgaagatcaacgcttcgtgttaaatcagatcgttacattcgctgttgaaaatagtgtc
gatgcggtgatcattgccggtgatatctatgacagatctgttccgccagccaatgctgtg
gcgctgctcgatgaggtggtgaatcgtctggtgaatgagttgaacattcccattatcatg
atcgcgggtaatcatgatggccatgaacgtctaggctttgcctcgagacagatgattgaa
agtggtttgcacataataggcccactgagtaaggacatttctactatcactctgtccggt
aagaatggcgatgctgtcttctatggcttaccctatgccgatccagccacagtgcgtcat
gtacttgattgtgaagtgacgagtcatgaagcggccatggttaaattgcttgagcaggtc
catggtcatgatagtcaaggcttacctaaagtagtgatcagccactgtttcctcgatggt
ggcagtgagtctgaatctgagcgtcccctgagtatcggcggtgctgataaaatttcccca
agcttatttactccgtttaattatacggcgctgggccatctccacggacctcagtataag
ggggctgagcatgttaggtattcaggctccatgcttaagtattctttcagtgagcagcat
cagaataaatcggttaccttggtcgaattagacgctcagggcgtggccaatatcaagctt
ttgccgctcaaggcttatagagatgtgcgcattatcgaaggggagttggctgagttactc
gaacaagggaaaaccgatgtcaatcgtgaggattacctcatggtgcgactcagcgataaa
actgccattttagatgccatgggtaagctgagaagcgtataccctaatgtgttgcatttg
gaacgtacgggcttgatggcggataacggcagagtcgcgctgagccgggatcatatcaag
aagggcgagctggatatgttcagtgacttcttctctcaggtatccggtgagccaatgacc
aaggcccaacaacaggccatgacagtggcaatcgatgagttacataaagtggagagcagg
tcatga
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