Shewanella violacea: SVI_3179
Help
Entry
SVI_3179 CDS
T01206
Symbol
rumA
Name
(GenBank) 23S rRNA (Uracil-5-)-methyltransferase RumA
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
svo
Shewanella violacea
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
svo03009
]
SVI_3179 (rumA)
Enzymes [BR:
svo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
SVI_3179 (rumA)
Ribosome biogenesis [BR:
svo03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SVI_3179 (rumA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
TRM5-TYW2_MTfase
PCMT
Methyltransf_11
RrnaAD
Methyltransf_23
MTS
Methyltransf_15
Cons_hypoth95
FtsJ
DUF900
Methyltransf_4
TPMT
Methyltrans_SAM
GARS_N
N6_N4_Mtase
DNA_methylase
CMAS
Motif
Other DBs
NCBI-ProteinID:
BAJ03150
UniProt:
D4ZAV5
LinkDB
All DBs
Position
complement(3603836..3605197)
Genome browser
AA seq
453 aa
AA seq
DB search
MAQFFKAKPNSSKQMSPKISLDVTQLDHLGAGIAHHDGKIVFIPGALPGEHVKGQLTEQK
KRHARAKLQEIVTPSQYRVTPKCAHYDQCGGCDLQHLSIDKQRNHKQDALVGLMAKLGQA
EAETLAPALIGKEWDYRRRARLATFYDRKTKHTTLGFRAKASKQVVKIEHCPVLAAPLSD
LILPLSQVLNRLASKKALGHVELIEASNGHFVVIRMTQSMADKDTEKLREFALSHKVSLI
VQGNESDLTLIGDEAKTLVIGSNELPYYELDNGIKLSFTPGNFVQVNAEINNAMVNQAVD
WLSVEPHERVLDLFCGVGNFSLPLAKKGASVIGVEGVPEMVQQAKLNATLSQLDNVSFFH
TDLSADLSKESWLGKVDKLLLDPARAGAFESLQWLKKMKPKSIVYVSCDPATLARDSEPL
LKHGYKLTKLALIDMFPQTHHIEAMALFELKGS
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggcacagttttttaaagcaaaaccaaatagttctaagcaaatgtcacccaaaataagc
ttagacgtgactcagctcgatcacttaggtgcgggtatcgctcaccatgatggcaagatt
gtcttcatacccggggcgttacccggtgagcacgtgaaagggcaattgaccgagcagaag
aagcgtcacgctcgtgctaaattgcaagagattgtcacaccatcccaatatcgagtcaca
cctaaatgtgcccattatgaccaatgtggtggttgtgacctgcaacatctttcaatcgat
aagcaacgtaaccataagcaagatgccttagtcggtcttatggcgaagttgggtcaggct
gaagctgagactctcgcaccggcactcataggtaaagaatgggattatcgtcgccgtgcc
agactcgcgaccttttatgataggaagactaagcataccactcttggctttagggctaag
gcgagtaagcaagtggttaaaatcgagcattgccctgtgttggcggcgcctctgtcagac
ttaattctgcctttatctcaggtgttgaataggctcgcgagtaagaaggccttgggccat
gtagagcttatcgaagccagcaatggacattttgtcgttatcagaatgactcaatccatg
gcggataaagatactgaaaaattgcgagaatttgccctaagtcacaaggtaagcttgata
gtacaaggtaatgaatccgatttaaccttgattggtgatgaagccaaaacgctggttatt
ggctcaaatgagctgccgtattatgaattggataacggcatcaaactgagtttcactccg
ggtaattttgtacaggttaacgccgaaataaataatgctatggtcaatcaagccgtagac
tggttatccgtcgaaccccatgaacgtgtgttagatctcttctgtggtgtcggcaacttc
agtctgccattagctaaaaaaggcgccagcgttataggtgttgaaggtgtgcctgagatg
gtgcaacaagccaaactcaatgccactttgagccagttagataatgtgtctttctttcac
acagatcttagcgccgacctttctaaagagtcctggctaggtaaagtggataagttgcta
ttagatccagccagagccggggctttcgagagtctgcaatggctgaagaaaatgaaacct
aaatcaattgtttatgtgtcatgcgatccggcaactctggctcgagacagtgagcctctg
ttaaagcatggttacaagttaacaaagttagctttgatcgatatgtttcctcaaacacat
catatcgaagccatggccttgttcgaattgaagggatcgtag
DBGET
integrated database retrieval system
