Shewanella violacea: SVI_3200
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Entry
SVI_3200 CDS
T01206
Symbol
glyA
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
svo
Shewanella violacea
Pathway
svo00260
Glycine, serine and threonine metabolism
svo00460
Cyanoamino acid metabolism
svo00630
Glyoxylate and dicarboxylate metabolism
svo00670
One carbon pool by folate
svo00680
Methane metabolism
svo01100
Metabolic pathways
svo01110
Biosynthesis of secondary metabolites
svo01120
Microbial metabolism in diverse environments
svo01200
Carbon metabolism
svo01230
Biosynthesis of amino acids
svo01240
Biosynthesis of cofactors
svo04981
Folate transport and metabolism
Module
svo_M00140
C1-unit interconversion, prokaryotes
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
SVI_3200 (glyA)
09102 Energy metabolism
00680 Methane metabolism
SVI_3200 (glyA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
SVI_3200 (glyA)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
SVI_3200 (glyA)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
SVI_3200 (glyA)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
SVI_3200 (glyA)
Enzymes [BR:
svo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
SVI_3200 (glyA)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
DegT_DnrJ_EryC1
OKR_DC_1
Cys_Met_Meta_PP
Chlorosome_CsmC
Motif
Other DBs
NCBI-ProteinID:
BAJ03171
UniProt:
D4ZAX6
LinkDB
All DBs
Position
complement(3621941..3623197)
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AA seq
418 aa
AA seq
DB search
MLKKDMNIADYDPQLFKAIEDETRRQEEHIELIASENYASPRVLEAQGSQLTNKYAEGYP
GKRYYGGCEYVDIAEALAISRAKELFGATYANVQPHSGSQANAAVFMALLQGGDTVLGMS
LAHGGHLTHGSHVSFSGKLYNAVQYGIDETTGKIDYAEVERLAIEHKPKMIIAGFSAYSG
IIDWSKFREIADKVGAYLFVDMAHVAGLVAAGIYPNPLPHAHVVTTTTHKTLAGPRGGLI
LSAIDDEAIYKKLNSAVFPGGQGGPLMHVIAAKAVAFKEALEPEFTVYQKQVVVNAKAMA
KTFIDRGYDVVSGGTDNHLFLLDLISKDMTGKDADAALGLANITVNKNSVPNDPRSPFVT
SGLRIGSPAITRRGFKEEQAVAITNWMCDVLDDITNEGTIERVKNQVLDLCAKFPVYS
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaaaaagatatgaatatcgcggactacgatccacaactgtttaaagcgattgaa
gatgagactcgccgtcaggaagagcatatcgaacttatcgcttcagaaaactacgctagt
cctcgtgttcttgaagcacaaggttctcagctaaccaataagtacgccgaaggttaccca
ggtaagcgttactatggcggttgtgagtatgtagatatcgcagaagcgctagccatttct
cgtgctaaagaacttttcggtgcgacttacgccaacgtgcaaccacattctggttcacaa
gccaatgctgcagtatttatggctctgcttcaaggcggcgacacagtactaggcatgagc
ctggctcatggtggtcacctgactcacggttcacacgttagcttctctggtaagctatat
aatgcggttcagtacggtatcgatgagactacgggtaagatcgattacgccgaagttgag
cgccttgctattgagcacaagcctaagatgatcatcgctggtttcagtgcttattctggc
atcatcgactggagcaagttccgtgaaatcgccgataaagttggtgcatacctgttcgta
gatatggctcacgttgccggtctggttgctgcgggtatctacccgaaccctctgccacac
gctcacgttgttactacaacaacccataagaccttagccggtccgcgcggtggtttgatt
ctttcggctatcgatgatgaagctatctacaagaagctaaactctgcagtattccctggt
ggccaaggtggtcctttgatgcacgttatcgcagctaaagcggtagcatttaaagaagcc
ctagagcctgagtttactgtatatcagaagcaagttgttgttaacgctaaggctatggct
aaaaccttcatcgatcgtggctatgatgtcgtttctggcggtaccgataaccatttattc
ttgctggatttgatcagtaaagatatgacaggtaaagatgccgatgcggctctgggtctt
gctaatatcacagtgaataagaactcagtaccgaacgatccacgttcaccatttgtcaca
tctggcctgcgtattggttctccggctatcactcgccgtggtttcaaagaagagcaagcg
gttgcgattactaactggatgtgtgatgtgttggatgacatcactaatgaaggtactatc
gagcgcgttaagaatcaggttctggatctgtgtgctaagttccctgtttatagttaa
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