Shewanella violacea: SVI_3254
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Entry
SVI_3254 CDS
T01206
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
svo
Shewanella violacea
Pathway
svo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SVI_3254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svo03019
]
SVI_3254
Enzymes [BR:
svo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SVI_3254
Messenger RNA biogenesis [BR:
svo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SVI_3254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BAJ03225
UniProt:
D4ZB30
LinkDB
All DBs
Position
complement(3685260..3686543)
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AA seq
427 aa
AA seq
DB search
MSERVDSAAKHGFSSLSLRPELLQVLTELGYTQPTPIQTQAIPAILAGQDIMAGAQTGSG
KTAAFALPILNKLTAQICLQKTEAQDSADKPAIRALVLTPTRELALQVHGSFVKYAKLTQ
VKSALVYGGVSIDAQAQILAAGVDILVATPGRLLDHLRRGSLNLNQLEFLVFDEADRMLD
MGFKDEIDAIVKQLPKTRQTLLFSATFDESIYGLSQSLLRDPKQIEVGERNAAAVEIDQR
VYAVDSDRKLALVTHLIESGNLQQVLIFSRKKLAADKLAANLTKAGISAQAFHGDLSQGA
REKVLQGFKDGEVRVLVATDVAARGIDIIDLNYVINYELPYKAEDYVHRIGRTGRAGNKG
LAITLLCSEDEHLLEEVEVVLDKRLPQQWLAGFEPDLTKSAAEPRKGGRNSHKQRAKKRA
YGGSRGR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacgcgtcgactctgctgctaagcatggattttcatccttatccctaagacca
gaattgttgcaggttttgactgaattaggctatacccagcctacgcctattcagactcag
gctattccggcaattttagccggacaggatatcatggccggtgctcaaactggctcggga
aagaccgccgcgtttgccttgcccattctcaataagttaactgcgcaaatctgtctgcaa
aagactgaagcgcaagactctgcagacaaacctgctattcgtgccctagtattgacgcca
acccgtgaacttgcgctccaggttcatggtagcttcgttaaatacgctaagctgactcaa
gttaaatctgctctggtatatggcggcgtgagtatcgatgctcaagctcagattttagcg
gccggggtcgatatcttggttgccacaccagggcgtttgctggatcacttaaggcgtggc
tctctgaacttgaatcagcttgaatttttggtattcgacgaagccgaccgtatgctggat
atgggctttaaagatgagatcgatgccatagtcaaacagctgcctaagacgcgccaaacc
ttgctgttttctgcgactttcgatgagtctatctatggtttaagtcaatcattgttacgg
gaccctaaacagattgaggtgggagagcgaaatgctgcggctgttgagattgaccagcga
gtttatgccgtcgacagtgataggaaacttgctttagttactcatcttattgagtctggc
aatttacagcaggtactcatttttagccgtaagaagctggccgcagacaagttggcggct
aatttaactaaggcggggatttcggctcaggcttttcatggggatctctctcaaggagca
cgtgaaaaggtgctgcaaggttttaaggatggtgaggtacgtgtgctggtggccacggac
gttgctgcaagggggatagatattatcgacctgaactatgtcattaattatgaactgccc
tataaagccgaggattatgtgcatcgcatcggccgcacgggacgggccggtaacaaggga
ctggccatcacactgctgtgcagtgaagatgaacacctgctcgaagaggtcgaagtggta
ctggataagcgacttcctcagcaatggttagcaggctttgagccggacttgactaagagt
gctgcggagcctagaaagggcggcagaaattcccataagcaaagagccaagaagcgtgct
tatggcggcagccgggggcgttaa
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