Shewanella violacea: SVI_3284
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Entry
SVI_3284 CDS
T01206
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
svo
Shewanella violacea
Pathway
svo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SVI_3284 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svo03019
]
SVI_3284 (pnp)
03016 Transfer RNA biogenesis [BR:
svo03016
]
SVI_3284 (pnp)
Enzymes [BR:
svo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SVI_3284 (pnp)
Messenger RNA biogenesis [BR:
svo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SVI_3284 (pnp)
Transfer RNA biogenesis [BR:
svo03016
]
Prokaryotic type
tRNA degradation factors
SVI_3284 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_RRP5
S1_2
KH_KhpA-B
DUF3016
Motif
Other DBs
NCBI-ProteinID:
BAJ03255
UniProt:
D4ZB60
LinkDB
All DBs
Position
complement(3723341..3725458)
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AA seq
705 aa
AA seq
DB search
MVHVNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKYEEPGRDFFP
LTVNYQERTYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVV
SVDPEINPDVISMIGTSAALAISGLPFNGPLGVARVGYINGEYILNPEVSQLVESDLDLI
VAGTQAAVLMVESEAASLPEEIMLGSVAYGHEQLQVVIDAVTELKAEAGKPAWDWSAPVA
DADLVEKIRVLAEADFAAAYQITTKHERRDAVNALKSVAIAKLVEENADIDLSEVGKLLA
SLEKKVVRGRIIAGQPRIDGREPDMVRGLNVMAGVLPRTHGSAIFTRGETQALVTCTLGT
ERDAQKVDSIMGEYTNRFMLHYNFPPYCVGETGFVGSPKRREIGHGKLAWRGMNAVMPSA
EDFPYSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVL
SDILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMD
QAIGTHRDDISAHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKIA
SSNGEATKEAIRRIEEITAEVEVGTIYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEER
VANVSDYLQTGQEVKVKVMEVDRQGRVRLSMKEAQPKTESAPAAE
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggttcacgtgaatccaatcgtaaagagttttgagtatggtcagcacacagtcacacta
gagactggggttattgcacgtcaagcagatgctgccgttttagcaagtatgggcgatact
acagttttagttactgtggtaggaaagaaatatgaagagccgggccgcgactttttccct
cttacagtgaattaccaggaaagaacatacgctgctggtaagatccctggtggtttcttc
aagcgtgaaggtcgtccatcagagagtgagacgctgattgcacgtcttatcgatcgtcct
attcgtcctctattcccaaatggtttcaagaatgaagttcaggtaattatcacagtcgtt
tctgtggatcctgaaatcaaccctgatgtcatctctatgataggtacttctgcagcctta
gcaatctctggcttgccattcaatggtccactaggtgttgcacgcgttggttacatcaac
ggcgaatatatacttaaccctgaagttagtcagttagttgagagtgacctagacctaata
gttgctggtactcaggctgctgtattgatggttgagtctgaagcagcttcattgccagaa
gaaattatgctaggcagtgttgcctatggtcatgagcaactacaagttgttatcgacgcc
gttactgagctaaaagccgaagcgggcaagcctgcatgggattggtctgctccagttgct
gatgctgatttggtagagaagatccgtgtacttgccgaggctgattttgccgctgcatac
cagatcactactaagcacgagcgtcgtgatgcggttaacgcacttaaaagcgtagcgatt
gcaaaattggtagaagagaatgctgacatcgatctaagtgaagtgggcaagttgcttgct
agcttagagaagaaagttgtacgtggtcgcatcatagctggtcagccacgtatcgatggt
cgtgagccagatatggttcgtggtcttaacgtgatggctggtgtacttccacgtacacac
ggtagcgcgatatttacccgtggtgagactcaagcactagtgacttgtactctaggtacc
gagcgtgatgcacagaaagttgacagcatcatgggcgaatacactaatcgctttatgttg
cactacaacttccctccttactgtgtaggcgagacaggttttgttggctcacctaagcgt
cgtgaaattggtcacggtaagctagcttggcgtggtatgaatgcagttatgccttctgca
gaagatttcccatacagcattcgcgtagtatctgagatcactgaatcaaacggttcaagc
tctatggcttcagtatgtggtacttctcttgcgttaatggatgcgggtgtaccaatcaag
acttctgttgccggtatcgctatgggtctagttaaagagggtgacgacttcgtcgttctt
tctgacattctgggtgatgaagatcacttaggcgatatggacttcaaagttgcgggtact
cgtgatggtatcactgcactgcagatggatatcaagatcgaaggtatcactaaagagatc
atgcagattgcacttcagcaagcttatggcgctcgagttcatatccttaacgtaatggac
caagctattggtacacatcgtgatgatatctcagctcacgcaccacgtattaccaccatc
aagatcaaccctgagaagatccgtgatgtaattggtaaaggtggcgctacaattcgtgca
cttacagaagaaactggtactactatcgagctagatgatgacggtacagttaagattgca
tcttctaacggcgaagcgactaaagaagctatccgtcgtatcgaagagatcactgctgaa
gttgaagtcggtactatctataacggtaaggttgttcgtatcgttgatttcggtgctttc
gttactatcttgcctggtaaagatggcttagttcacatctctcagatcgctgaagagcgt
gtagctaacgtttctgattacctacagactggtcaagaagtcaaagttaaggtgatggaa
gttgaccgtcagggccgtgtacgtctttctatgaaagaagcacagcctaagactgagtca
gcacctgctgccgagtaa
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