Shewanella violacea: SVI_3285
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Entry
SVI_3285 CDS
T01206
Name
(GenBank) GGDEF domain protein
KO
K21024
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
svo
Shewanella violacea
Brite
Enzymes [BR:
svo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
SVI_3285
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GFIT
Motif
Pfam:
EAL
GGDEF
GAPES3
CHASE5
HAMP
Motif
Other DBs
NCBI-ProteinID:
BAJ03256
UniProt:
D4ZB61
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Position
3725633..3727687
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AA seq
684 aa
AA seq
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MDELMTASFKSLTWKQTCLVVFSALFFAIAIFIVEIALVGVTTRDELKASQQELLDSVEQ
PASNAVWALDDNLAKQTLEGVLKVAHVGSAVIELEDGSMFVSVASAVSSPNMFDQLSKNL
FSGLREISRPLYRPQYRPFNFKDTDPQLIGTLTIFYNTQELTDSLFLQLRFSLIATLIRA
LLITLVLSIVFHRFLTKPIAEISEAIDKIDPESPGENLLPVSKAHMDDELGLVTSKFNQI
LIQFGQTQSKLRKMATRDPLTGLPNRTLLLETVAVSIQRARVHNLQFCMLFIDLDRFKNV
NDSLGHALGDQFLVRIAQVLERVVADKGTVARLGGDEFVILADEISSPDQAADFVEHLLF
QLNSPMQLNEHTIHPAASVGISIYPDDGKSAEDLIRHSDIAMYSAKAAGSNQWAFFKQQM
TERAAVRLRTEASLHDALKNNEFVLHYQPKLDIQTGKVVACEALIRWQKDGRLISPMSFI
PVAEETGIIIPIGRWVIEQACKTIKEWQNKYNFALPIAVNVASQQFEDPSLIPDIKQLSL
RYQIRPELLEIEITETSLMNDVEKAITKLEQLKSAGFGIAVDDFGTGYSSLSYLRHLPIT
TMKIDRCFVTDLPKESAIASTILMLGKQLKLNIVAEGIENQEQLDWLKANHCQMGQGFFF
SKPLSQHDFEEKYIKPHTASISQI
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggatgagttaatgactgccagctttaaatcgcttacatggaaacaaacttgcctcgtc
gttttttcggcgcttttctttgcgattgccatttttatcgtcgaaatagccttagtcggt
gtcaccaccagagatgaacttaaagcatcacagcaagagttgttagactcggtagagcag
cccgcatcgaatgccgtctgggccttagatgataacttagccaaacagacactagagggt
gtattaaaagttgctcatgttggatctgctgtcatcgaacttgaagacggctccatgttc
gtctcagtcgcctcagctgtctcttcgccgaatatgtttgatcaattaagtaaaaatctt
tttagcggtcttagagaaatctcgcgccccctttatcgtccccaatatagaccctttaat
ttcaaagacactgacccacagctcattggcaccctgaccatcttctataacacccaggaa
cttaccgactcgctctttttacaactcagattcagcttaatcgcaaccttgatccgagcg
ctgcttatcactctagtactttcgattgtttttcatcgtttcttaactaagcccattgcc
gagatcagtgaggcaattgacaagatagatcctgagtctcccggtgaaaaccttctacca
gtctccaaagcccacatggatgacgagctaggcctagttacatcaaaatttaaccagatt
ctaattcagttcggccagactcagagtaaactcagaaaaatggccactcgagatcccctc
acaggtttacctaaccgcacgttactactggaaaccgttgcggttagcattcagagagct
agagtacataatcttcagttttgcatgttgtttatcgatctcgatcgttttaagaacgtc
aacgattctctgggacacgcacttggcgatcaattccttgtacgcatagctcaagtcctc
gagcgcgtcgtcgcagacaaggggactgtggcgcgtcttggcggagacgaatttgtaata
ttagccgatgagatatctagcccagatcaggctgcagattttgtcgagcatctgttattt
caattgaactcccctatgcaactcaacgagcacaccattcaccctgcggcgtcagtgggt
atatctatctatcccgatgacggtaagagtgccgaagatctgatccgccattcggatatc
gccatgtatagcgcaaaggcggcaggctcgaatcaatgggccttcttcaaacaacaaatg
acagaacgtgcagcggtcagattacgtacagaagcctccctgcacgatgcactaaagaac
aatgagtttgtgctacattaccaacctaaactcgatatccagacaggtaaagtcgttgca
tgtgaggcgctcattcgttggcagaaagatggtcgcctgatcagccccatgtcctttata
cctgttgccgaagaaaccgggataatcataccaataggacgctgggtcatagaacaggca
tgtaagactattaaggagtggcagaataaatataattttgcactgcctattgcggtcaat
gttgcttcacaacaatttgaagatccaagtctgattccagatataaaacagctatctctt
agatatcagataagacctgaactattagagatagagatcaccgaaacttccttgatgaat
gatgtagaaaaagccattactaagttagagcagttgaaatcggcagggttcggtatcgca
gttgacgatttcggtactggctactcttcattatcctatctacgccaccttcctattacc
accatgaagatcgatcgctgttttgtcactgatctacccaaagagagtgctatagcctca
accatcttaatgttaggtaaacaacttaaactcaatattgtcgcggaaggaattgaaaac
caggagcagctggattggctcaaagccaatcattgtcagatgggacaaggtttcttcttc
agtaaacctctatctcagcatgattttgaggaaaaatacatcaaaccacatacggcaagt
atcagtcagatttga
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