Shewanella violacea: SVI_3287
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Entry
SVI_3287 CDS
T01206
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
svo
Shewanella violacea
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
svo03016
]
SVI_3287 (truB)
Enzymes [BR:
svo01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
SVI_3287 (truB)
Transfer RNA biogenesis [BR:
svo03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SVI_3287 (truB)
Prokaryotic type
SVI_3287 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
BAJ03258
UniProt:
D4ZB63
LinkDB
All DBs
Position
complement(3728415..3729377)
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AA seq
320 aa
AA seq
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MGRRQRGRFIDGILLLDKETGMSSNFALQRVKRLFDANKAGHTGALDPLATGMLPICLGE
ATKFSQHLLDADKRYLVTAKLGVRTDTSDSDGEVVQTRPLDFTQELLMESLDYFRGETMQ
VPSMFSALKHKGQPLYKYAREGIEVPREARPITVFELNFISLEGDELTLDIHCSKGTYIR
TITDDLGEMLGCGAHVIMLRRTQVADYPYDRIVSLTELNEMVEKAEAEGADAKAMLDELL
LPMDSAVSKFQEINLADTVAPYLMNGNPVQNPGGCQLADGELVRITIGEEHKFVGIGSIN
DDGLLAPKRLIVLREPLETV
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgtcgtcagcgtggtcgcttcattgatgggatccttctcttagataaagagacc
ggaatgagctctaactttgctctgcaaagggtaaagcggcttttcgatgccaataaagcg
ggtcatactggcgccttagatccattagccacaggtatgttacctatatgcctgggtgaa
gctaccaaattttcccagcatcttctcgatgcagataagcgatatctggtcacggctaaa
ctaggcgtacgcacagatactagtgattcagatggtgaagtggtgcagactcgtcctctg
gatttcacccaagaattactgatggagtctctggattattttcgtggtgagacgatgcag
gtgccttccatgttctcggcgctcaagcataagggccagcccctttataagtatgcccgt
gaaggcatagaagtgcccagagaagccagacccatcactgtatttgaactgaattttatc
tctttagaaggcgatgaactgaccttagacatacattgttcaaagggaacctatattcgt
accatcacagatgatcttggtgagatgttgggctgtggcgctcatgtgataatgcttagg
cgtactcaagttgcagactacccttatgatcgcatcgtaagcttgactgagctcaatgag
atggttgaaaaagctgaggccgaaggcgctgatgctaaagctatgctggatgagctattg
ttgcctatggattcggcggtcagtaagtttcaagaaatcaacttagccgacactgtcgca
ccttatctaatgaatggtaacccagttcaaaatccaggtggctgtcagttagccgatgga
gagctggtgcggatcactataggtgaagagcataagttcgtcggtattggttcaatcaat
gatgatggtctgctggcacctaagcgactcatcgtacttagagagcccttagaaacagtc
tag
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integrated database retrieval system
