Shewanella violacea: SVI_3379
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Entry
SVI_3379 CDS
T01206
Name
(GenBank) toxin secretion ABC transporter protein, HlyB family
KO
K11004
ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
Organism
svo
Shewanella violacea
Pathway
svo02010
ABC transporters
svo03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
SVI_3379
03070 Bacterial secretion system
SVI_3379
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
svo02000
]
SVI_3379
02044 Secretion system [BR:
svo02044
]
SVI_3379
Transporters [BR:
svo02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
SVI_3379
Secretion system [BR:
svo02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
SVI_3379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
Peptidase_C39
SMC_N
ABC_ATPase
AAA_29
AAA_16
AAA_22
NB-ARC
DUF87
MeaB
AAA_21
PRK
AAA_18
Motif
Other DBs
NCBI-ProteinID:
BAJ03350
UniProt:
D4ZBF5
LinkDB
All DBs
Position
complement(3825432..3827672)
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AA seq
746 aa
AA seq
DB search
MSSNFFSGIQCLSLVARFHQIPAEPSALLREFQFNDADDTNSPLADINLVRAAKSLGFKA
KFIADTADKLTEHVLPAIARHIDGHFFIIIKVNDDEILVQDMVGTVANPTTYTHTELNAC
WTGDLLLLSKRSSLISGVMTESAKFGFSWFIPALIKYKIYFGDVFVASFFIQLVGLASPI
FFQVVIDKVLVHKGMTTLDVLAVGFFIVITFEVVLTGLRTYVFSHTTNRVDVELGSKLYK
HMLSLPVAYFNSRRVGDTVARIKELDSIREFLTGSSLTVVLDVFFSFVFFGVMFYYAPLL
TWIIIGTIPFYLALSLIITPSLRKRLNEKFQRSAENHSFLVESVNGVETIKAMAVEPQLR
NKWEDKLADYVNISFKTSNLNNVYSQIAAYINKIGGLLTLYFGSIAVVAGELTIGQFIAF
NMLSQRVSGPIMRLVNLWQDFQQANISLQRLGDVLNSPSEPGYNPNRATLPDIMGKVVFD
DVIFRYAPNRVPVLNNISFQCQPGEVIGIVGRSGSGKSTLTKLIQRLYVPEAGRVLIDGV
DLAMVEPAWLRRQVGVVLQENFLFNLTVRENIALVDPSMPMEQVVNAAQLSGAHEFILEL
PEGYDTVIGEQGSSLSGGQRQRIAIARALVTNPKILIFDEATSALDYESESIIQANMRRI
SQGRTVFIIAHRLSAVKDANRIMVVDKGRLVEQGNHQQLVKQGGIYAQLHSIQNHHGLGM
AAKPLAQAPINPIVQNKPNTGDKNVS
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcaactttttttcagggatccaatgtttatcattggttgcccgttttcaccag
atccccgctgagccgagtgcgttgctgcgtgaatttcaattcaatgatgctgatgatacg
aactcgcccttggcagatattaatttagttcgtgcagctaaaagtctcggttttaaagcc
aaatttattgcagatacagcggataagcttactgaacacgtattgcctgcgatagctcgg
catatcgatggtcactttttcattattatcaaagtgaatgatgatgaaatattagtccaa
gatatggttggtacagttgctaacccaacgacctatacacatacagagctcaatgcgtgt
tggacaggtgatctgttattactatccaaacgtagctcattaataagtggggtaatgaca
gaaagtgctaagtttggcttttcgtggtttattcctgcactgattaaatacaaaatttat
tttggcgatgtttttgtggcgtctttttttattcagttagtcgggttagcttcaccaata
ttctttcaagtagttattgataaagtactggtgcataaaggcatgaccacacttgatgtg
cttgcagttggcttttttattgtgattacttttgaagtggtgcttaccgggcttcgaacc
tatgtgttttcccatactactaatcgcgtggatgttgagctaggcagtaaattatataag
cacatgctgtcattgccggtggcttactttaatagtcgccgagtgggtgacacagtagcc
agaattaaagagctagacagtattcgggagtttttaaccggttcatcattaactgttgtg
ctcgatgtgttttttagttttgtctttttcggggtgatgttctattacgcaccgctactg
acatggataattattggcactatccctttctaccttgctctttcattaattattactcct
agcttacgtaaacgactgaatgagaaattccagcgaagtgctgagaatcattcatttcta
gttgaatcagttaatggtgttgaaaccattaaagccatggcagtggagccacaactccgt
aataagtgggaagataaactggctgattacgttaatatttcttttaaaacgagtaacttg
aataacgtatacagtcaaattgcagcctacataaacaagattggtggcttgttaacatta
tattttggctctattgcggtggtagcgggagagctgaccatagggcagttcattgcgttt
aatatgttgtctcagcgtgtgagcggccccattatgcgtttagtaaatttgtggcaagac
tttcagcaggcgaatatttcactgcaacgtttaggtgatgtattaaattctccttctgag
cccggttataacccaaaccgtgccaccttgcccgatatcatgggcaaggtggtattcgat
gatgtcatatttcgttatgccccgaaccgagtacctgtattaaataatatcagctttcag
tgccaacccggtgaagtgataggtattgttggtcgctcaggttcaggaaaaagcacctta
accaaattaatacaaaggttatatgtacctgaagctggcagagtgctcattgacggtgtt
gatttagccatggttgaacctgcatggcttcgcaggcaagtcggtgtggttttacaagag
aactttttgtttaatctcacggttcgagaaaacatcgcccttgttgacccaagtatgcca
atggaacaagtcgtcaatgcggcacaacttagtggtgctcatgaatttattttagagttg
cctgaaggctacgatactgttattggcgagcaaggctcgtcattatcaggcggtcaacgc
cagcgtattgcgatagccagagcattggtcactaaccctaaaatactgatttttgatgaa
gccaccagtgcgctcgattatgaatcagaaagtattattcaagctaacatgcgccgcatt
agccaaggcagaacagtctttatcattgctcatcgactctccgcagttaaagatgctaac
cgcattatggtggtagataaggggagattagttgagcaaggtaatcaccagcagttagtc
aaacagggcggtatatacgcacaacttcactcaattcaaaaccaccacggtttaggtatg
gcggctaagccgctagcacaagcgccgataaaccccatagtacaaaataaacctaatacg
ggagataaaaatgtctcataa
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