Shewanella violacea: SVI_3542
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Entry
SVI_3542 CDS
T01206
Symbol
ung
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
svo
Shewanella violacea
Pathway
svo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SVI_3542 (ung)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svo03400
]
SVI_3542 (ung)
Enzymes [BR:
svo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
SVI_3542 (ung)
DNA repair and recombination proteins [BR:
svo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SVI_3542 (ung)
Prokaryotic type
SVI_3542 (ung)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
BAJ03513
UniProt:
D4ZBW8
LinkDB
All DBs
Position
complement(4005272..4005940)
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AA seq
222 aa
AA seq
DB search
MTVHSNWNTFIEAEKSLVYYQKLQGFVQSERDSGKAIYPPQEEVFTAFEKTPLDKVRVVI
IGQDPYHGPNQAHGLCFSVKHGVKTPPSLVNIYKELVTDITGFKTPDHGHLSSWAEQGVL
MLNTVLTVEQGLAHSHGKSGWETFTTNALKLLNEQETPLVFIFWGAHAIKKGKVITSEHH
HILSGPHPSPLSAYRGFFGCKHFSKTNALLASLGTKQIDWQV
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atgactgtacactccaattggaacacctttattgaagccgagaaaagcttagtgtattac
caaaaacttcaagggtttgttcagagtgaacgcgatagtggcaaagccatatatcctcct
caagaagaggtattcaccgcattcgagaagacgccactagataaggtgagagtggtgatt
attggtcaagatccttaccacgggccaaatcaagcccacggtctgtgtttttcggttaaa
catggtgttaaaacaccgccttctttggtgaatatatataaggagttggtgactgatatt
actggttttaaaaccccagatcatggccatctctccagttgggccgagcaaggggtatta
atgctcaacacggtattgaccgtcgaacagggcctggcgcattcccatggtaaatctggt
tgggaaacttttaccactaacgcgctcaagctgctaaacgagcaggaaacacccctagtg
tttatcttctggggagcccatgcgatcaagaagggcaaggtgatcacatcagagcatcac
catatactatctggcccacacccttcacctctatcggcataccgcggcttcttcggctgt
aaacatttctccaagactaatgcattactggcatctcttggaaccaaacagatcgattgg
caggtatag
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