Shewanella violacea: SVI_3617
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Entry
SVI_3617 CDS
T01206
Name
(GenBank) 2'-5' RNA ligase, putative
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
svo
Shewanella violacea
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
svo03016
]
SVI_3617
Enzymes [BR:
svo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
SVI_3617
Transfer RNA biogenesis [BR:
svo03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
SVI_3617
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
BAJ03588
UniProt:
D4ZC43
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All DBs
Position
4100215..4100823
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AA seq
202 aa
AA seq
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MQRLFLGVSPTKQQVNQLCDIQSLLKAAGHKGYGRPVNRNNFHMTLAFLGQTHDACLAQL
IKAIDLMAHTDGWTKFSITFDKLTLWRKPQVLCLSAPSLTQVSLNPDLYYAVEHCQRIIH
SIQSKSAPSSSIDNGVEQLTRPHLHFTPHITLLRKAKLLPKETLMQLGLTPITLTPNQMH
LYQSVSGERGVEYHILQSWPLV
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgactatttttaggtgtctcgccaactaagcagcaagttaatcagctctgtgat
attcagtctctattgaaggccgctggccacaaaggctatggccgcccagtcaatcgaaac
aatttccatatgactctggcctttctcggtcaaacccatgatgcttgtcttgctcagtta
attaaggctatcgatctaatggctcacaccgatggctggacaaaatttagcatcaccttt
gacaaattaaccttgtggcgtaaacctcaagtcctgtgtttatccgcgccttccttgact
caggtatcactcaatcctgacttgtactacgccgtggaacattgccagaggattattcac
tcgatacagtcaaaatcggcacctagcagctccatagacaatggcgtcgagcagctaact
cgcccccacctccatttcactccccatattaccttactcaggaaagccaagttgctacct
aaagaaactctgatgcagctgggcttaacgccgatcacactgacgccaaatcagatgcac
ttatatcaatctgtcagcggcgaacgtggcgtcgaataccatattttacaatcttggcca
ttagtctaa
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