Shewanella violacea: SVI_3622
Help
Entry
SVI_3622 CDS
T01206
Symbol
pcnB
Name
(GenBank) polyA polymerase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
svo
Shewanella violacea
Pathway
svo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SVI_3622 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svo03019
]
SVI_3622 (pcnB)
Enzymes [BR:
svo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
SVI_3622 (pcnB)
Messenger RNA biogenesis [BR:
svo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SVI_3622 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Gad2
DUF5539
Motif
Other DBs
NCBI-ProteinID:
BAJ03593
UniProt:
D4ZC48
LinkDB
All DBs
Position
4104985..4106292
Genome browser
AA seq
435 aa
AA seq
DB search
MSENAIKVLYRLHKSGFKAYLVGGGVRDILLGLQPKDFDVVTNATPEEIKGLFRNCRLIG
RRFRLAHIVFGRDVIEVATLRGHHVDSGEKISKTNAEGRLLRDNVYGTIDEDAERRDFTV
NALYYDISDFSIHSYGGGLQDLQSRTIRMIGDPNTRYREDPVRMLRAVRFATKLNMTIEK
DTAAPISELAPLLKDIPAARMYEEILKLFFNGHALNNFNMMRDLGLFEPLFPLVNSQLVD
EPNGPANKMMKSIMQSTDSRVKAEKTVTPAFFYAAILWYPLSQRADDIALEGGLSLYDAY
YAAMGDVMEQQCSTISIPRRFSTPAKDIWQLQLRFDRNQGTRAFKFIEHPKFRAAYDLLL
LRASAEGGAVAKSAAWWKSFVEGGEEQRSVIARSVNKGSRNRNSNQRRRRKPSAKKTSEN
TGEQAASPSTDKPAG
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaacgccataaaggtactctatcgcctacataagtctggctttaaggcgtat
ctagtcggtggcggcgtgcgcgatattctcctgggattacaacctaaagattttgatgtt
gtcaccaatgccacacctgaagagatcaagggtctgttccgaaattgtcgactcattggc
cgacgctttcgtctggcccatatcgtcttcggccgtgatgtcatcgaagttgctacctta
cgcggtcatcatgtggactcgggagagaaaatctccaagaccaatgccgaaggtagactg
ctgcgtgataacgtctatggcaccatagatgaagatgccgaacgccgtgacttcaccgtc
aatgcgctctattacgacatcagtgacttctctattcacagttatggcggtggtcttcag
gatcttcagtctcgaaccatcaggatgataggcgatcctaatacccgctaccgtgaagat
cctgtgcgtatgctcagagcagtgcgcttcgccactaagctcaacatgaccatagagaaa
gacacagctgcgccgatttctgaattggcacctctgttgaaagatatcccagcggcccgc
atgtatgaagagatccttaaactcttcttcaatggtcatgcactgaataacttcaacatg
atgcgtgatctaggtctgtttgaaccactattccctctggtcaatagtcaacttgtcgat
gagccaaatggcccggcgaataagatgatgaagagcataatgcagagtacagattctcgg
gtaaaagccgagaaaacggtcactccagcattcttctacgccgcgattctttggtacccc
ctcagtcaacgcgccgatgatatcgctttagagggtggtttaagtctttacgatgcctat
tacgccgctatgggcgatgtaatggagcaacaatgtagtaccatcagtattccacgccgc
ttcagtactccggcgaaagatatctggcaactacagttacgattcgatcgtaaccaaggg
acacgcgccttcaagtttatcgaacatcctaaattccgtgctgcctatgatctgttattg
cttagagcaagcgcagagggtggcgcagtggctaaatctgccgcttggtggaagagcttt
gtcgaaggtggtgaagagcaacgtagcgtcatagctcgctcagtcaacaagggcagtcgt
aaccgtaattcgaatcagcgccgtcgtcgtaagccatcggctaagaagacctcggagaat
acaggcgagcaagcagctagcccgtcaacggataagcctgccggctaa
DBGET
integrated database retrieval system
