KEGG   Shewanella violacea: SVI_3726
Entry
SVI_3726          CDS       T01206                                 
Symbol
ssb
Name
(GenBank) single-strand binding protein
  KO
K03111  single-strand DNA-binding protein
Organism
svo  Shewanella violacea
Pathway
svo03030  DNA replication
svo03430  Mismatch repair
svo03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:svo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SVI_3726 (ssb)
   03430 Mismatch repair
    SVI_3726 (ssb)
   03440 Homologous recombination
    SVI_3726 (ssb)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:svo03032]
    SVI_3726 (ssb)
   03400 DNA repair and recombination proteins [BR:svo03400]
    SVI_3726 (ssb)
   03029 Mitochondrial biogenesis [BR:svo03029]
    SVI_3726 (ssb)
DNA replication proteins [BR:svo03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    SVI_3726 (ssb)
DNA repair and recombination proteins [BR:svo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Other MMR factors
     SVI_3726 (ssb)
  TLS (translesion DNA synthesis) factors
   Other SOS response factors
    SVI_3726 (ssb)
Mitochondrial biogenesis [BR:svo03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial DNA replication factors
   Other Mitochondrial DNA replication factors
    SVI_3726 (ssb)
SSDB
Motif
Pfam: SSB SSB_1 tRNA_anti-codon
Other DBs
NCBI-ProteinID: BAJ03697
UniProt: D4ZCF2
LinkDB
Position
complement(4223896..4224582)
AA seq 228 aa
MASRGVNKVILVGNLGKDPEVRYMPNGNAVANFTVATSESWKDQQGQQQERTEWHNIVMY
RRLAEVAGEYLKKGSKVYIEGKLQTSKWQDQSTGQDRYKTEINANEMQMLDSRGQGGGQQ
GGFGQQQGQQQQSGGYQQAPQQQQGGYQGGQQQAAPQQQAPQQAGYGQQQAAPQQQAPAY
APKPQQAPQQAAPKAAPQQRPAPQPQQAAPQQNFTPDLDDGWDDDIPF
NT seq 687 nt   +upstreamnt  +downstreamnt
atggccagtcgtggtgtcaataaggtaattttggtcggtaacttagggaaagaccctgaa
gttcgttacatgccaaatggcaatgccgtagccaactttacagtggcgacgagtgagtct
tggaaagaccaacagggtcaacaacaagagcgcacagagtggcacaacatcgtcatgtac
cgtcgcttagctgaagttgccggcgaatacctgaagaaaggttctaaggtttatatcgaa
ggtaaattgcagaccagtaagtggcaagatcagtctaccggtcaagaccgttataagact
gagatcaatgctaacgagatgcagatgctcgatagccgtggtcaaggtggcggacagcaa
ggtggctttggtcaacagcaaggtcagcagcaacaatctggtggttaccagcaggcgcct
caacagcagcaaggcggctatcaaggtggtcagcagcaggcagcaccgcagcagcaagct
cctcagcaagctggttatggtcagcaacaggctgcaccacagcagcaagctccagcttat
gcgcctaagcctcaacaagcaccacagcaggcggctcctaaggctgctccacagcaacgt
cctgcgcctcagccacaacaggctgctccgcaacagaactttacaccggatctcgatgac
ggttgggatgatgatatcccgttctag

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