Shewanella violacea: SVI_3730
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Entry
SVI_3730 CDS
T01206
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
svo
Shewanella violacea
Pathway
svo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SVI_3730 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svo03019
]
SVI_3730 (deaD)
03009 Ribosome biogenesis [BR:
svo03009
]
SVI_3730 (deaD)
Enzymes [BR:
svo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SVI_3730 (deaD)
Messenger RNA biogenesis [BR:
svo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SVI_3730 (deaD)
Ribosome biogenesis [BR:
svo03009
]
Prokaryotic type
rRNA helicases
SVI_3730 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAJ03701
UniProt:
D4ZCF6
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All DBs
Position
4230732..4232585
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AA seq
617 aa
AA seq
DB search
MSSNEQTFRELGLSEPLLRSLDDLGYEKPTPIQAASIIPLMAGKDILGQAQTGTGKTGAF
ALPLLSTIDSSLNAPQILVLAPTRELAVQVAEAFASYAKHMKGLHVLPIYGGQSMHQQLN
ALRRGPQVIVGTPGRVMDHMRRGTLKLDSLKAMVLDEADEMLKMGFIDDIEWILEHTPKQ
RQLALFSATMPEQIKRVANKYLTEPVHVKIAATTATVETIEQRFVQVSQHNKLEALVRVL
EVESTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGSLDILI
ATDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTDRAGRSGMAILFVTHREMRMLRTI
ERATKSRISPMDVPSPESVTERRLSRLGEQVAEIISKDSLDFMKGAVAQLCQQLEVDTDI
LAAALLQQVQKERPLQLPAMNERQRDSRDSRDSRNTRDRNDRGERGARGERSERPRRDSR
PTPSNLGSADSLKDNPDVKMCRYIIDVGRDNGVGVGNIVGAVANEANIDSRYIGQIQLFD
QITAIDLPAGMPADVLQHLRKVRVCGKPLNIREAEGAELPAGGDSRPARRPRKPSSDRRP
ASGDKKPHRKGGAPKES
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccaatgaacaaactttccgcgaactcggactttccgagcctcttttgcgttct
cttgacgaccttggctatgaaaagccaacgccgattcaagccgcaagtattatccctctt
atggctggtaaagacatattaggtcaagcgcagactggtacaggtaaaacaggtgctttc
gcactgccactacttagcaccatagattcttcgcttaatgctcctcaaattttagtcttg
gcaccgactcgtgaacttgcagtgcaagttgccgaagcattcgctagctatgctaaacat
atgaaaggtttacatgtactgccgatttacggtggtcagagcatgcaccagcaactgaat
gccctaagacgtggccctcaggtcatcgtaggtacacctggtcgtgtaatggaccatatg
cgtcgcggtacacttaagctagattcactaaaagctatggtgctcgacgaagccgatgaa
atgctaaaaatgggcttcatcgacgatatcgaatggatccttgagcatacgccaaagcaa
cgtcaactagctcttttctctgcgactatgccagagcaaattaagcgtgttgctaataaa
tatttgaccgagccagttcacgttaaaattgcagctaccacagcgacagttgaaactatt
gaacagcgcttcgttcaagtctcacagcataacaagctagaagcactagttcgtgtctta
gaagttgagagcaccgaagggattatcatcttcgtacgtactcgtaatagctgtgtagaa
cttgcagagaaacttgaagcccgcggttatgcatcatcgccacttcatggtgacatgaac
cagcaggcgcgtgaacgtgccgtcgaccagcttaagcgtggctctttagacattcttatt
gcaacagacgttgcagctcgtggtctagatgttgaacgtatcggacacgtaataaactac
gatattccatatgatactgaagcttatgttcaccgtattggtcgtacagaccgagctggt
cgttcgggtatggctatcttgtttgtgacacacagagaaatgcgtatgctacgcactatc
gaacgtgcaactaagagccgtatttctcctatggacgtaccgagtcctgagtctgtgacc
gagcgtcgtctttctcgcttaggtgagcaagtagccgagataatcagcaaagattcacta
gacttcatgaagggtgctgtagctcagctatgtcagcaacttgaagtcgacacagatatt
cttgccgccgctctgcttcagcaagtacagaaagaacgtccactgcagttacctgcaatg
aacgaacgtcagcgtgatagccgtgatagccgtgattcacgtaacactcgagatcgtaat
gaccgtggtgagcgtggtgctcgtggtgagcgcagtgagcgtccacgtcgtgattcacgt
ccaactcctagtaacttaggatccgctgactcacttaaagacaatccagacgttaagatg
tgtcgttacatcatagacgttggccgtgacaatggcgttggcgttggtaacatagtaggt
gctgtagctaatgaagctaacatcgacagccgttacataggtcaaatccagttattcgat
caaataacagccatcgaccttccagctggaatgcctgcagatgtactacaacaccttaga
aaagtgcgtgtttgtggtaagccattgaacatacgtgaagctgaaggtgctgaacttcct
gctggcggagatagccgtccagcacgtcgtccacgtaaaccttcaagcgatcgtcgccca
gcatcaggtgacaaaaaaccacatcgtaaaggtggcgctcctaaggagagctaa
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