Shewanella violacea: SVI_3827
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Entry
SVI_3827 CDS
T01206
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
svo
Shewanella violacea
Pathway
svo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SVI_3827 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svo03019
]
SVI_3827 (rhlB)
Enzymes [BR:
svo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SVI_3827 (rhlB)
Messenger RNA biogenesis [BR:
svo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SVI_3827 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAJ03798
UniProt:
D4ZCQ3
LinkDB
All DBs
Position
complement(4353357..4354673)
Genome browser
AA seq
438 aa
AA seq
DB search
MSETHLSNQKFADFSLHEGIKTALNESGFEFCTPIQAASLPILLQKKDIAGQAQTGTGKT
LAFLVATFEHLLTTPIPEGRQLNQPRAMIMAPTRELAIQIAKDATLLAKHTGLKVGIVYG
GESYEVQRKVLDKGIDILIGTTGRIIDYVRQGIINLSAIQAVVLDEADRMFDLGFIKDIR
FLFRRMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIFYPSM
DEKMRLLLSLIEEDWPEKAIVFSNTKHSCENVWSWLSGDGHRVGLLTGDVPQKKRIRILE
QFTTGELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGISISFA
CEEYALNLPAIEEYILHSIPVSNYDSEGLLEDIPAPIRIHRKHNSRPQGRSGSGRSNGSR
NGNRNSAPRRHDKTRRHS
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaacacatttatctaatcagaagtttgccgacttttcccttcacgaagggata
aaaacagcacttaacgagagcggctttgaattttgcacgccgattcaagcagcatcatta
ccgatccttttgcagaaaaaagatatcgcgggtcaagcacagaccggaacagggaagact
ttggctttccttgtagcgacctttgaacatctgctaacaaccccaattcctgaaggtcgt
cagctaaatcaaccgcgtgccatgatcatggcgccgactcgtgagctggctatccagatc
gctaaagatgcgacactattggcaaaacataccggtttgaaagtcggtattgtctatggt
ggtgaaagctatgaagttcagcgtaaagtgctggataaaggcatagatatacttattggt
accacgggacgtattatcgattacgttcgtcagggcatcattaatttgagtgcgattcaa
gcagttgtactcgatgaagccgatcgtatgttcgatcttggctttattaaagatatccgc
tttctattcagacgtatgccagatgccaaatcgcgtctgaacatgctgttctctgcgacc
ctttctatgaaggtgcaggaactggcttatgatcatatgaatgagcctgagaaagtcgtt
atcgcgccgaacgaaaaaacttctaaaaacattaaggaagagatcttctacccatctatg
gatgagaagatgcgtcttctattgtctcttattgaagaagactggccagagaaggcaatt
gtgttctctaatactaagcacagttgtgaaaatgtctggtcttggttgtcaggtgacgga
catcgtgtcggtctgctaaccggcgatgtgccacagaagaaacgtattcgtattcttgag
cagtttacaaccggcgagctagatatcttagttgctaccgatgtagcggctcgtggcctg
catatctcagatgtatcccacgtatacaactatgatcttcccgatgattgcgaagactat
gttcatcgtatcggtcgtaccggtcgtgcgggtaagaaaggcatatccatcagcttcgcc
tgtgaagaatatgcactgaatctgccggcgattgaagagtatattcttcattcgatccct
gtgtctaactatgacagcgaaggcctgttggaagatattccagcaccaatacgaattcat
agaaagcataacagtcgtcctcaaggacgtagtggttcgggtcgttcaaatggaagtcgt
aatggtaatcgtaacagcgcacctcgccgtcacgataagacccgtagacattcataa
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