Shewanella violacea: SVI_3847
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Entry
SVI_3847 CDS
T01206
Symbol
rtxB
Name
(GenBank) toxin secretion ATP-binding protein
KO
K12541
ATP-binding cassette, subfamily C, bacterial LapB
Organism
svo
Shewanella violacea
Pathway
svo02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
SVI_3847 (rtxB)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
svo02000
]
SVI_3847 (rtxB)
02044 Secretion system [BR:
svo02044
]
SVI_3847 (rtxB)
Transporters [BR:
svo02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC-BAC subgroup
SVI_3847 (rtxB)
Secretion system [BR:
svo02044
]
Type I secretion system
Adhesin protein transporter
SVI_3847 (rtxB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC_membrane
AAA_21
SMC_N
Peptidase_C39
AAA_15
AAA_13
AAA_29
AAA_22
MMR_HSR1
nSTAND3
AAA_23
NACHT
DUF87
AAA_24
Motif
Other DBs
NCBI-ProteinID:
BAJ03818
UniProt:
D4ZCS3
LinkDB
All DBs
Position
4398145..4400319
Genome browser
AA seq
724 aa
AA seq
DB search
MPVTASQKNEQWTVSASQRVSVDPLLDSLVLLTEYFGSPCSSESLAAGLPLSSSVLTPDL
VPQAAGRAGLTAKLTRKGLNQVSPIFLPCILLLKDKKACLLREVDFDKDRAVIQLPETGG
EQVLSIEELEAIYVGYLFLVKQQYRGDMGFDVHRHDTSSHWLLQTLKDSAPIYRDALIAS
VLVNIFALVSPLFIMNVYDKVVPNLAFESLWVLAIGAGIAYIFDLIMRQLRAYLIDVAGK
KVDIIVSSRLFAKAIGIPLEKRAPSVGGMAKQLGEFDSIREILTSATITTLVDLPFAIFF
MLIIYIVAGDLAIIPFLGGIIIIGYTLIVQPKLKAAIEESNKFSSLKHGHLIESLASLES
IKSSGAEGLVQKSWQQMIGHTANWQLKSKKLSTSVTNLANFTVQLSVVCVVILGVYRVAD
NAISMGGIIAAVILSSRAISPMAQLAGLMTRGNHTASALRQLDEIMAQEDEFENKGHLVS
RQRLEGQIDADHISFSYPGSEKPVLHTMSLSIKPGERIAIIGRNGSGKSTLAKMLVGLYQ
PTKGSLRYDGLDSAQIHPTDLRRNFGYLPQDITLFHGSIRDNILFGTRQVSEHQLIRAVQ
LSGINLFTDLETEGLDQQVGEGGQSLSRGQRQTVALARATLNDPPVLLMDEPTASLDARA
EKQFIRAMQNVSRDRTLLIITHKMHLLKLVDRIIVLDRGHVIADGPKDEVLDKLSKGLLS
GAAK
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
gtgccagtaacagcttctcagaaaaatgagcaatggacagtctccgcttcacaaagagtc
tctgtcgatcccttgctagacagcttagtcctgcttaccgaatatttcggtagcccatgc
tccagcgaatcgctggcggcaggactgcccctatcctctagcgtgcttacaccggatcta
gttcctcaagccgctggacgtgcgggcttaacagcaaaattaacccgtaaggggctgaac
caagtatcgcctatcttcctaccttgtatcttgctgctcaaagacaaaaaagcttgctta
ctcagagaggtcgatttcgataaagacagagcagttattcagctaccggaaaccggtggc
gagcaagtcctatccatagaagagctggaagctatctatgttggttacttgtttctggtt
aaacagcaataccgtggagatatggggttcgatgttcatagacatgacactagcagtcac
tggctattacaaacccttaaagattcggctcccatctatcgagatgcattaatcgcctcg
gtattggtcaatatattcgccctggtctccccacttttcatcatgaatgtctacgataaa
gtggtacctaacctggcatttgaatctctgtgggtcttagctataggtgcaggtattgcc
tatatttttgaccttatcatgcggcaattaagggcttatcttatcgatgttgcgggtaag
aaagttgatatcatagtctcttcacggttatttgctaaagccattggtattccattagag
aagcgcgccccaagtgtaggcggcatggcgaaacaactgggcgagtttgatagcattcga
gagatcttaacctctgcgacgattaccactctggtggatcttcccttcgccatcttcttc
atgttaataatctatattgtggctggtgatctcgcgattatcccattcctaggtggcatc
ataattatcggttacaccttgatagtgcaaccaaaactcaaagccgcgatagaagagagc
aataaattttccagtctcaaacatggccatctgattgaatccctcgcgtccctggagtcg
attaaatccagtggcgccgaaggcttagttcagaaaagctggcagcagatgatcggccat
actgcaaactggcaattaaagtctaagaaactgtcgacttcagtgactaacctggccaac
tttaccgtacaactctcagtggtatgcgtggttatcttaggtgtttatcgggtcgccgat
aatgcaatatctatgggtggcatcatagctgcggttatcttatctagccgtgcaatctct
cccatggctcagttggcaggtttgatgacccgaggcaatcataccgccagcgctttgcgt
cagttagatgagatcatggctcaggaagatgagtttgaaaacaaagggcatcttgtcagt
cgtcagcgcctggaaggtcaaatcgatgcagaccacatcagcttctcctatccaggatct
gaaaagccggtattgcacacaatgtcactcagcatcaaacccggtgaacgcatagccatc
attggccgtaacggttcaggtaagagcaccctggctaagatgcttgtaggcctgtatcag
ccgacaaaaggaagccttagatatgatgggttagattcggctcaaatacatcccactgac
cttcggaggaactttggctacctaccccaggatatcaccctgttccatggttccataaga
gataatatcttgtttggtactagacaggtcagcgaacatcaactgatcagagcggtgcag
ctgtccgggatcaacctgtttaccgatcttgagactgaaggtctagatcaacaggtcggt
gaaggcggtcaatccctctcccgtggccagagacaaactgtcgccttggcgagagccacc
ttgaatgatcctccagtgctgttaatggatgagccaacagccagcctagatgccagagct
gagaagcagtttatacgggcgatgcaaaatgtcagcagagatagaaccttactgataatt
actcataagatgcatctgcttaaacttgtggatcgcatcatagtactggaccgaggtcat
gtcatcgcagatggtcccaaagacgaggtattagataaactgagtaaaggcttactctct
ggagccgcaaaatga
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