Shewanella violacea: SVI_3854
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Entry
SVI_3854 CDS
T01206
Name
(GenBank) GGDEF domain protein
Organism
svo
Shewanella violacea
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GGDEF
EAL
GAF_2
GAF
GAF_3
RNase_E_G
YlxR
COG5_N
Motif
Other DBs
NCBI-ProteinID:
BAJ03825
UniProt:
D4ZCT0
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Position
4408557..4411187
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AA seq
876 aa
AA seq
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MFREELVQYSHSEAERLQKRMARLKSLALKYKRAEVIQNLLLEISNLAAHVNSSEAFFSE
VHRSLNLLLPADNFFVALLDPSSNKLSIPFFLDEKDPHPNKIYSQDEISEFLFSGLTGYV
LKSGETLLCDQACFEQLIATKKIASRGAPCHLWLGVPINVNNQVSGVLVVQSYSADIKFS
EMEVELLHFVSYQISGVIERLEHREQLEKAIEQRTKELSIAYDKLKTEVFERRRAERLQK
SLFEIADLATSNIDSDSFYFELHRVISHLLPASNCYIALLDDRRTHISFPFYVTQNDSKA
PQPRAICDGLTEYVIKHRRPLLLQRTDLDALIDAGIVHSKTPELNYTQDVYQWIGIPLFI
HGQVRGALTIYSLCMSQSYQDKDLELLTFVSQHIATAIEKKLSAESLKSSYEQLEEKVVV
RTRALAMLNQDLEKEVTQRRKVEEQLVHDANHDSLTGLPNRAMFMERLTQAVKHIRRHGL
DRFGLLFIDLDRFKLINDTLGHQQGDRFLVETSRRLRLCIRDNDTLGRIGGDEFVILLDS
INSTSDAKEVAERILTELSRPYELANQSFTSSASIGVAFSCNHKSDTAESLLRDADAAMY
QAKSKGKGCYVIFDEKSHQQLVKNVELEIELRQAISNQELHLSYLPIQNLKKLSTVALEP
RLYWNHPQLGKVKQAQLNNIAEHCNLTTDLDIYLLDKLNTDHQLLREQSLDHLPLHLNIS
AMHLKHKHAVRQLKNKLKKSMFPPEQLWLFFDEKGFILDTDNHINAFELLQKLKVKLGLT
GYGSAHSALSSLTFLPLQGLKLDPTYTSHLNSEQHLKLLKAHYLTAQALELVVFVDGISA
MQQKETLLQIGFDLGQGQALGKVINLTSITKDLVCA
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgtttagggaagaattagttcaatattcacacagtgaagctgaacgtttgcaaaaaagg
atggctcgattaaagagcctggctctcaaatacaagcgagccgaagtaattcagaatcta
ctgttagagatctcaaatctagcagctcatgtaaattcatctgaagctttcttttcagaa
gttcatcgctcactaaatttactccttccagcggataatttttttgtcgccttgttagac
ccaagttctaacaaattgagtattccttttttcctcgatgaaaaagaccctcatcccaac
aagatctattctcaagatgaaatttcagagttcctctttagcggtcttacgggatacgtg
ctcaagtccggtgaaacgctcctttgtgatcaagcctgttttgagcaacttatcgccact
aaaaaaattgccagcagaggagcaccatgccacctgtggttaggtgtgcctattaacgtg
aataatcaggtttctggggtattagtggtacaaagttactctgccgatatcaagttttct
gagatggaggtagagctacttcattttgtcagttatcaaatctccggcgtaattgaacgt
ttagagcatagagaacagttagaaaaggcaatagagcagagaaccaaagagcttagcatt
gcctacgataagctcaagactgaagtatttgaaagacgtcgtgccgagcgtctacaaaaa
tctctgttcgaaatagcagatcttgccacctctaacatagatagcgactctttctatttt
gagcttcatcgagtgatcagccatttactgccggcaagtaactgctacatagctcttctc
gatgacaggcggactcatataagctttcctttctatgtgactcagaacgattccaaagca
ccacagcccagagccatatgtgacggtttaactgaatatgtcatcaaacatcgtagacca
ctgttacttcaacgtaccgacctagatgccttaatcgacgcgggaattgtccattcaaag
actcctgagctcaactatacccaagacgtatatcaatggattggtatccctttgtttatc
catggacaggtgcgtggtgccttaaccatctatagcctatgcatgtcccagagttaccaa
gataaagatctcgagctgcttacttttgtttctcaacacatagccactgccatagaaaag
aaactctccgcagaatcgcttaaatccagctacgagcaactagaagagaaagtcgttgtc
cgaactagggctctagctatgttgaatcaagatttggagaaggaagtaacccaaaggcgt
aaggtggaagagcagcttgtccatgatgctaatcacgacagtcttacaggcctgccaaat
agggccatgtttatggagcgcctgacgcaagccgtaaagcatattcgccggcatggacta
gatcgcttcggtctactgtttatcgatctagacaggttcaaactcattaacgacacctta
ggtcatcagcaaggagatcgttttctggttgaaacctcaaggcgcctacgcttgtgtatt
cgagataatgacaccttaggccggatagggggagatgagtttgtgatcttactcgacagt
atcaatagcactagcgatgcaaaagaggttgcggagcgcatcctcactgagttatcgcgc
ccctatgaactagccaatcaaagtttcacctcaagtgccagcataggcgtcgcatttagc
tgcaaccataagtcagatacggctgagtctctattacgtgacgccgatgcagccatgtat
caagccaagtccaagggcaaaggttgttatgttattttcgatgagaagtctcatcaacag
ctagtcaaaaatgtcgagcttgagattgaattaaggcaagccatatcgaaccaagagcta
cacctgagttatctgccgattcagaacttaaagaaactatctacggtagccttagagccg
cgcctgtactggaatcacccccaactgggtaaagtgaaacaagcccaactgaataacatt
gccgagcattgcaacttaaccacagatctggatatctatctgctggacaaactcaacaca
gatcatcagctgctgcgcgaacaatccttagaccacctgcccctgcatctcaacatttct
gccatgcatcttaagcataaacatgccgtcagacagctaaaaaataaacttaagaagagt
atgtttcccccagagcaactgtggctatttttcgatgagaaaggctttatcttagataca
gataaccacatcaatgcatttgaacttctgcaaaagctaaaggttaaactcgggctgaca
ggttatggcagcgcccatagtgccttaagcagtttaaccttcttaccactgcaagggcta
aagctggatcctacttacaccagccacctcaacagtgagcaacaccttaagctattaaag
gcccactacttgacagctcaagccttggaactggtggttttcgtggatggaattagtgca
atgcagcaaaaagaaacattgctgcagataggtttcgatctgggtcagggacaagccctt
ggtaaagtcatcaacctgacttctatcaccaaggatttagtttgcgcttaa
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