Shewanella violacea: SVI_3878
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Entry
SVI_3878 CDS
T01206
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
svo
Shewanella violacea
Pathway
svo03420
Nucleotide excision repair
svo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SVI_3878 (uvrD)
03430 Mismatch repair
SVI_3878 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svo03400
]
SVI_3878 (uvrD)
Enzymes [BR:
svo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SVI_3878 (uvrD)
DNA repair and recombination proteins [BR:
svo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SVI_3878 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
SVI_3878 (uvrD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_12
ResIII
Motif
Other DBs
NCBI-ProteinID:
BAJ03849
UniProt:
D4ZCV4
LinkDB
All DBs
Position
complement(4445697..4447862)
Genome browser
AA seq
721 aa
AA seq
DB search
MDVSSLLDGLNDEQRAAVGAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAV
TFTNKAAAEMRDRVEKVSGSNMGRMWIGTFHGLAHRLLRTHYKDANLPQTFQIIDSDDQL
RLIKRILKSLNLDEKQYPPRQAQGYINGKKDQGLRPKHIDAGGFPIEQNLLQIYQVYQES
CDRAGLVDFAEILLRAHELWLNNPHVLKHYQDRFKNILVDEFQDTNAIQYAWIRVLASAG
ANVMIVGDDDQSIYGWRGAQVENLHKFLVDFPQASTIRLEQNYRSTGHILKASNELIANN
PDRLGKKLWTQDKDGEPISVYCAFNEMDEARFIVGRISDWHDMGGDLSGCAILYRSNAQS
RVLEEALLHKGLAYRIYGGLRFFERQEIKDAMSYLRLINNKDDDAAFERVVNTPARGIGG
RTLDILRATARQQKLTLWQTCLRAIEEKLLSGRAANAVRGFMDLIVEMQQDTQEMTLHRT
TDHIIAKSGLKAMYEAEKGEKARSRVENLDELVTAARTFIMPEDIEDIGELNAFLSHAAL
EAGEGQADAFTDAVQLMTLHSAKGLEFPVVFMSGVEEGIFPSQMAMDEGDRLDEERRLCY
VGMTRAMEKLYITYAETRRIYGRENFARPSRFIKEIPTEHVEEIRLKTKVSTPKRPNTSF
TRSIVVNDTGFKVGQGVMHPKFGEGKVTDTEGSGSQSRVQVNFYDVGSKWLVVAYARLET
C
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcttctttactagacggcctgaatgatgaacagcgcgcagccgtaggggca
ccccaatccagcatgttggtattggcaggagctggcagcggcaagactcgggtattgacc
catagaattgcctggttgatgcaggtcgaacagcagagtccatattcaattttagcggta
accttcaccaataaagcggcggcagagatgcgcgatcgagttgagaaggtcagtggcagc
aatatgggtcgcatgtggataggtacctttcacggtctggcgcatcgcctattgcgtact
cattataaagacgctaatttgccccagacgtttcaaatcatcgattcagatgatcagcta
cgtctaatcaaacgtattcttaagagccttaatttagacgagaagcaatatccgcctcgt
caagctcagggctatatcaacggtaagaaagatcagggattaagacctaagcatatcgat
gccggtggcttccctatagagcaaaatcttttacagatttatcaagtttatcaagagtcc
tgcgatcgcgccggtttggtggactttgctgaaattctactgcgtgcccacgagctatgg
ctcaacaatccccatgttcttaaacactatcaagacaggtttaagaatattttggtggac
gagtttcaggataccaacgcgattcagtatgcttggatccgtgtgctggcgagcgccggt
gctaacgtgatgatcgtcggcgacgatgatcagtcaatctatggttggcgtggtgcccaa
gttgagaatttacacaagtttcttgtggatttcccccaggctagcaccatacgtctggag
cagaattatcgttccacaggccatatccttaaagcttccaatgagctgatcgccaataac
cctgatcgtttgggcaagaagttgtggactcaagataaagatggtgagcccatatcagta
tattgtgcattcaatgagatggatgaagcgcgatttattgttgggcgcatcagtgattgg
cacgatatgggcggagacctcagtggttgcgcaattctgtatcggtctaacgcccagtct
cgagtactggaagaagccttgcttcacaagggcttagcttatcgtatctatggtggcttg
agattcttcgagcgccaggagattaaagatgccatgagttatctgcgtcttatcaataat
aaagatgatgatgcggcattcgagcgtgtggtcaatactcctgctcgtggcattggtggg
cgtacactagatatcttacgtgctaccgcaagacagcagaagttaaccttgtggcaaacc
tgtttgcgtgccatagaagagaagctactcagtgggcgcgcggcgaatgccgtacgtggc
ttcatggatctcattgttgagatgcaacaagatacccaagaaatgaccttgcatcgtaca
actgaccatatcattgccaagtcaggccttaaggccatgtatgaggcagagaaaggcgaa
aaggcgcgctctcgagtggaaaacctcgatgaactcgtgaccgcagcacgtacctttatc
atgcccgaagatatcgaagatattggcgagcttaatgctttcctatctcatgcggcattg
gaagctggtgaaggacaggcggatgcatttaccgatgcggtgcagctgatgacattgcat
tcggctaaaggtttggaattccctgtggtatttatgtccggcgtcgaagagggaatattc
cccagtcagatggctatggatgaaggagatagactcgatgaagagcgtcgcctctgttat
gtaggcatgactcgggccatggagaagctttacatcacctatgccgagactcgtcgaatc
tacggccgggaaaacttcgctaggccatcacgcttcatcaaagagatccccactgagcat
gtggaggagatccgccttaagactaaggtgagtacgcctaaaaggcccaacacatctttt
actcgtagcatagtggtgaatgatacgggctttaaggtcggccaaggggtgatgcatcct
aaatttggtgaaggtaaggtgactgatactgagggcagtggttcccaatccagagtacaa
gtgaatttctacgatgtcggcagtaagtggttggttgtagcctatgctcgactggaaact
tgctaa
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