Shewanella violacea: SVI_3904
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Entry
SVI_3904 CDS
T01206
Name
(GenBank) sensory box/GGDEF family protein
Organism
svo
Shewanella violacea
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_4
PAS
PAS_9
PAS_8
Motif
Other DBs
NCBI-ProteinID:
BAJ03875
UniProt:
D4ZCY0
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Position
complement(4473060..4475636)
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AA seq
858 aa
AA seq
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MHIGKKLIVFVVGFCIPAMIAVSYCSSIWFDHRIESLKLDLVSTELVSIKSQLDKDIKQL
DLFANIYAAPQSELSSLKRAALAEAWRTSKISEHLRVYHLDGGQLKLFSPRYDDPMSFEL
NSIPGYLLHGSSPHSGVYMDKGIGYIVSVVPNEPDSPVMLVRRLTPEYLSSYALQGLVSQ
VIIAQGVRQANPLRNTSVIELPSLIYDKPVHLEITFSDSVFSQGKLQHYLVPFCIVCVGI
LILIAGYIWLNLGLIRPFHRLMTQLEGINPKAKTYTPLIAGDSPEFVLIADRVNHLLAKI
VQLKEHAKSSLGSISEAVILTDAEAKLVYLNPLAERLLGVKGPDVLGEKVDVLLKTDRNI
NQDLFDLMASRARQPILSKLKLQGESTRIVERSISTRLNHKQLVVGTVILLRDITQEELL
KRKLHHRVNLDPITSLLNRRAFEDKLEAFSLGAQSIAICYFDLEQFKLINDSCGHSAGDR
MLVMVARAMQSCLTQDQMLARFGGDEFGLAIRDHSALEVAQLTKRIVASVSMQVLQDKNN
ACHYKVGVSAGIAIARAPYISEKELLKDADIACFAAKGKGSNQVHFYDDKDKDLIFQRNA
PMWAVRIGQAIEHNELLLYYQPIKGVGPGKHRQRMEILLRIQEPNGRILAPAQFIAAAEQ
FKLMSYVDKEVIRKAFLWLSMHEEIWEDHCISINLSGNSLGAEGMVDYIIQQFERFAIPS
ECICFEITETSAIQNKKRAMEMLEYLRKLGFSFALDDFGSGFASYGYLKELPVDYVKIDG
CFVKNLATNAKDYAIVKSIHDICGVMGIETVAEFVENQDIIDKLQEIGINYAQGYAIGRP
QPLSSYQPSQSVSRRLIA
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgcatataggcaaaaaactgatcgtctttgttgttggcttctgtatacctgcaatgatt
gctgtttcctactgttcaagcatctggttcgatcatcgaatcgagtctttaaagctggac
ctagtgagtacagagttagtcagcataaagtctcagctggataaagatatcaagcagtta
gacttgttcgctaatatctatgctgcgccccagtcggagctaagctcccttaagagagcc
gccttagctgaagcttggcgaacgagtaagatatctgagcatctcagggtctaccatctc
gatggtggacagctaaaattattttctcctcgctatgatgaccctatgtcattcgagctt
aattctattcccggctatctgttacacgggagctctcctcattccggggtgtatatggat
aaaggcatcggctatatcgtgagcgtcgtgccgaacgagcctgatagtccggtcatgttg
gtgaggcgactcactcctgaatacctatcgagttatgccttacaaggcttagtgagccag
gtcattattgcccaaggtgtgcgacaggctaatccgcttagaaatacctctgtcatcgaa
ctgcctagcctgatctatgataagcccgtgcacctagagatcactttctctgacagtgtt
ttcagtcaagggaaattacaacattatctggtaccgttttgcatagtttgtgtggggata
ttaatactcattgcaggttatatttggttgaatttaggccttatacgtccgtttcatcgc
ttgatgacacagctggaggggattaatcctaaggctaagacttatacgcctctgatagct
ggtgacagtcccgaatttgtgctgatagctgatagggttaatcatctgcttgccaagatt
gttcaactgaaagagcatgcgaaatctagcttagggtcgatttctgaggcagttatattg
accgatgccgaggctaaacttgtgtatttgaatcccttggccgagaggttactcggggtc
aaagggcccgatgtccttggggagaaagtcgatgttttgctcaaaacggataggaatatt
aaccaagacttgttcgatctaatggctagccgggcacggcaaccgatactgagtaagctt
aagctgcaaggcgagtcgacacggatcgtggagcgtagcatcagtacgcggcttaatcat
aagcagctagtggtgggaacggttattctgctcagagatattactcaggaggagctgctc
aagcgtaagttacatcacagagttaatctagatccaatcacttccttacttaaccgtcga
gccttcgaagataagctggaggcatttagccttggggctcaatcgatcgctatctgctat
tttgatttagaacagttcaagttaatcaatgattcctgcggtcatagtgcaggagatagg
atgttggttatggtggcaagggcgatgcaatcttgtttgacccaagatcagatgttagcc
agattcggtggcgatgagtttggtttagccattcgggatcatagtgccttagaggtcgct
caattaaccaaacgcatagttgccagtgtgtcgatgcaagtgctgcaggataagaataat
gcctgtcattataaagtgggtgtcagtgctgggatcgccatagccagagccccttacatc
tcggagaaagagttactcaaagatgccgatattgcctgttttgcggcaaaaggtaagggc
agtaatcaggttcacttctatgatgataaagataaagacctgattttccagcgcaatgcg
cctatgtgggcggtaaggattggccaggctatagaacacaatgaactgctgctctactac
caaccgattaaaggcgtggggcccggtaagcataggcaacgcatggagatcttgttgcgt
attcaggagcccaatgggcgaatattagcaccggctcagtttattgccgccgcagagcaa
tttaaattgatgagctatgttgataaagaagtgatcagaaaggcttttctttggctatct
atgcatgaggagatctgggaagaccactgtatctctattaatctatcgggcaatagtcta
ggggctgaaggcatggtggactacattatccagcagttcgagcgtttcgccatacccagt
gagtgtatctgttttgagatcaccgagaccagtgcgattcagaataaaaaaagggcgatg
gagatgctcgaatatctgagaaagcttggcttctccttcgcattagatgattttggtagt
ggcttcgcctcctatggttacctcaaggagctgccagttgattatgtgaaaatagatggt
tgcttcgtgaaaaacttagccactaacgctaaagactacgccatcgttaagtctatccac
gatatctgtggtgttatgggcatagagacagttgccgagtttgtggaaaaccaagatatt
atcgataagctacaagagattggaattaactatgctcagggctatgccataggccgacct
caacccctatccagttatcagccaagccaatctgtatcccggcgtctgatagcataa
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