Shewanella violacea: SVI_4035
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Entry
SVI_4035 CDS
T01206
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoylalanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
svo
Shewanella violacea
Pathway
svo00470
D-Amino acid metabolism
svo00550
Peptidoglycan biosynthesis
svo01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
SVI_4035 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
SVI_4035 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
svo01011
]
SVI_4035 (murD)
Enzymes [BR:
svo01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
SVI_4035 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
svo01011
]
Precursor biosynthesis
Amino acid ligase
SVI_4035 (murD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MurD-like_N
Mur_ligase_M
Mur_ligase_C
Shikimate_DH
KR
Motif
Other DBs
NCBI-ProteinID:
BAJ04006
UniProt:
Q9F1N2
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All DBs
Position
complement(4628940..4630295)
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AA seq
451 aa
AA seq
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MTMELDNSHLVLGLGATGLSVVRYLCRQGITPLVMDSRDQPPGAEQLALEFPEVNLITGG
FDCRYLVQASQIVISPGIAIDTPEIRAAIDMDIEVIGDVELFARAIKDRSPCVIGITGSN
GKSTVTTLVGEMAKAAGLNYAVGGNIGIPVLDLLQKPVDLYILELSSFQLETTHSLNCIS
ATCLNISEDHMDRYSDLEAYRQAKLALYDQSKRALFNREDSLTQPNDPMNQNSFGLTSPV
NDEWGVKDGKIVHGTTEIASLQDVAIVGSHNHANLIAAMALAYHAGIDKEPMIQVAKNFT
GLAHRCELVANIAAVAYVNDSKATNVGATVAALEGLGEHLGDIILIVGGDGKGADFTPLE
TVFNKVAHLITLGKDGDKIAALKEHSHKADSMADAVKQAAELATAGDIVLLSPACASLDM
YKNFMARGDDFRQLAQALSVETLDSEASADV
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
ttgacgatggaactggacaattcgcacttagttttaggcttgggagccaccgggctttcg
gttgtgcgttatttgtgccggcaggggatcacacctcttgttatggacagtcgtgatcag
cctccaggagctgagcagttagcgctcgaatttccagaggttaacttaattacaggtggt
ttcgattgccgctatctggtgcaggcaagccaaatagtgattagtcctggtatcgccata
gatactcctgagatccgtgccgccatagacatggatattgaggttattggcgatgttgaa
ttgttcgctagggcaattaaagatagaagtccttgcgtcatagggatcacaggctccaat
ggtaagtctacagttacaacattagtgggtgagatggccaaagctgcgggtctgaattat
gcggtgggtggcaatataggtattccggttttagatctactacagaagcctgtagatctt
tatatactcgagctgtctagttttcagctagagactactcatagcttgaattgtatttcg
gcgacctgcttaaatatcagtgaagaccatatggatcgctatagcgatctagaggcttac
cgacaagctaagttggccctgtacgatcagagtaagcgggcgctgtttaaccgtgaagac
tctctgactcaacccaatgacccaatgaatcaaaatagctttggtttgacgtcaccggta
aatgacgaatggggtgtcaaggatggcaagatagtccatggcacaaccgagatagcctcg
ttacaagatgttgcgatcgtcggcagccataatcatgccaatttaattgccgccatggct
ctggcttatcatgctggaatagacaaagagccaatgatccaagtggctaagaatttcact
ggtctagcccacaggtgtgagcttgtggcaaatatcgctgcagtcgcatacgtcaatgat
tcaaaggcgacgaatgtcggtgctacagtggcggcgttagagggactcggcgagcatcta
ggtgacattattctgattgtcggtggagatggcaaaggagccgatttcacgcctctagaa
acagtatttaataaagttgctcacctaattaccttaggtaaagatggcgataaaattgcg
gcgctaaaagaacactcccataaagctgattctatggcggatgccgtcaaacaagctgcc
gagttggcaactgctggcgatattgttttgttgtctccggcttgcgcgagtttagatatg
tataagaatttcatggcgagaggcgatgattttcgtcaactagcacaggcgttaagtgta
gaaaccttagattctgaggctagtgctgatgtctag
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