Shewanella violacea: SVI_4085
Help
Entry
SVI_4085 CDS
T01206
Name
(GenBank) long-chain-fatty-acid--CoA ligase, putative
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
svo
Shewanella violacea
Pathway
svo00061
Fatty acid biosynthesis
svo00071
Fatty acid degradation
svo01100
Metabolic pathways
svo01212
Fatty acid metabolism
svo02024
Quorum sensing
svo04146
Peroxisome
Module
svo_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
SVI_4085
00071 Fatty acid degradation
SVI_4085
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
SVI_4085
09145 Cellular community - prokaryotes
02024 Quorum sensing
SVI_4085
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
svo01004
]
SVI_4085
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
svo04147
]
SVI_4085
Enzymes [BR:
svo01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
SVI_4085
Lipid biosynthesis proteins [BR:
svo01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
SVI_4085
Exosome [BR:
svo04147
]
Exosomal proteins
Exosomal proteins of breast milk
SVI_4085
Exosomal proteins of breast cancer cells
SVI_4085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
SH3_1
Motif
Other DBs
NCBI-ProteinID:
BAJ04056
UniProt:
D4ZDZ5
LinkDB
All DBs
Position
4684496..4686199
Genome browser
AA seq
567 aa
AA seq
DB search
MPIGMPLIITSMELPMESQIKTPVEMLDHWVDTLGDSTYLRQPINGQYQDFSWREVQQKM
QQLAGALRHLGLKPGDKIAVLSKNCAEWFITDLALMHGGYISVPIYPTANADTIAYVLEH
SEAKAIIIGKLDYWADQETGVGGDILRMSMPYDTMPAQYKWDSLLQLGEPLLDAPYATPE
QTMTLIYTSGSTGKPKGAIQTFASYAWTCKAVVRDLKTGVDDRLISYLPLAHITERVAME
GSSFYSGSCVAFVESLDSFVADVQRARPTIFFSVPRLWSLFHQNIVAKIGKSKLNLLLKI
PIIKGIIKKKIHAGLGLEHCRLLGSGSAPIPPSLIHWYHTIGLNISEGWGMTENSAYSII
NYPFDANKIGTVGRAVEDCLIKQTASGELLVKSPGLMTGYYKQEEMTAISFDEEGYFRTG
DLCSIDSDGYVSITGRIKDNFKTSKGKYVAPVPIERKLAQDPHIELLCVIGSGLPHPIAL
VQLSEGAYLQPREEVRSSLKATLDSINPNLESHEAVDAIIVVNDAWDVDNDVLTPTLKIK
RHVLEKRFSERVDGIRGGKIRWEDEIT
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
ttgccgattggaatgccattaataatcacaagtatggagttgccgatggaatcacagatc
aaaacacctgtagagatgctcgaccactgggtcgacacactcggtgactcaacttaccta
agacaaccgatcaatggccagtaccaagactttagctggcgcgaagtacaacagaagatg
cagcagcttgctggggccctaagacacttaggactaaagccaggtgacaaaattgccgtg
ctctctaaaaactgtgccgaatggtttattaccgatcttgccctgatgcatggcggctat
attagtgtgcccatctacccaactgccaacgcagataccatagcttacgtgttggaacac
agcgaagccaaggccattattatcggtaaactagattactgggccgaccaagaaactggg
gttggcggcgatatattgagaatgtccatgccctacgacactatgccggctcaatataag
tgggacagcttactgcaacttggagagccactgctagatgccccatatgccactccagag
cagacaatgacgctgatctatacttccggctctactggcaaacctaagggtgcgattcaa
accttcgctagctacgcttggacctgtaaggcggtggtaagagatctcaaaaccggagtc
gacgatagattaatctcttacctacctctggctcacatcacagagcgcgtggcgatggaa
ggctcatcattttattccggcagctgtgtcgctttcgttgagagtctggatagtttcgtt
gccgatgtacaacgtgccaggcctacgatatttttctcggtccctaggctctggagtcta
ttccaccaaaatattgtcgccaagattggcaagagtaagctgaacttgctgcttaaaatt
cctattatcaaggggatcatcaagaagaagatccatgcaggtctgggtctggagcactgt
cgcctactgggatctggctcagcgccgattccaccatcactgattcactggtatcacacc
ataggtctgaatatcagtgaaggctggggaatgacagaaaacagcgcctactccatcatc
aactaccccttcgatgccaataaaatcggcacagtcggtcgcgccgtcgaggattgtttg
atcaagcaaacggcgagtggcgagctcttggtaaaaagcccaggcttgatgactggttac
tataaacaagaggagatgactgccatctcattcgatgaagaaggttacttccgtaccgga
gatctctgctccatcgacagcgacggctacgtgtcgattaccggtagaatcaaagataac
tttaagacatctaaaggcaaatatgtcgcccctgtgcccatagagcgtaaactggcacaa
gatccccatattgagctgctttgcgtcataggttctggcctgccccatccaatagcccta
gtacaactatccgaaggcgcctatttgcagccaagagaagaggttcgtagctcacttaag
gcgactttagacagtatcaaccccaaccttgaatcccatgaagccgtggatgccatcata
gtcgtcaatgacgcctgggatgtggataacgatgtgctgacgccgacactaaaaattaag
cgccatgtacttgaaaaaagattcagtgaaagagtcgacggtattcgcggtggcaagata
cgttgggaagatgaaataacttag
DBGET
integrated database retrieval system
